RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 MCF2P10911 925 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 BMP8BP34820 402 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 GATMP50440 423 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 NLRP12P59046 1061 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 OSTNP61366 133 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 ZCWPW2Q504Y3 356 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 FAM109BQ6ICB4 259 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-227ENST00000557269 CHRDL2Q6WN34 429 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 RNF169Q8NCN4 708 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 RNPC3Q96LT9 517 aaKnown RBP14.02□□□□□ -0.17
SHMT2-227ENST00000557269 MED15Q96RN5 788 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 PCIF1Q9H4Z3 704 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 RNF19AQ9NV58 838 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 PTPRSQ13332 1948 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 SYCE3A1L190 88 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 GOLGA8IPA6NC78 632 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 TRIM49BA6NDI0 452 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 GOLGA8JA6NMD2 632 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 EFCAB14O75071 495 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 AMHP03971 560 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 FGFR1P11362 822 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 AKAP5P24588 427 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 TNFSF9P41273 254 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 MATR3P43243 847 aaKnown RBP eCLIP14.01□□□□□ -0.17
SHMT2-227ENST00000557269 AFF1P51825 1210 aaKnown RBP14.01□□□□□ -0.17
SHMT2-227ENST00000557269 NOLC1Q14978 699 aaKnown RBP eCLIP14.01□□□□□ -0.17
SHMT2-227ENST00000557269 DCAF4L1Q3SXM0 396 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 ANKRD40Q6AI12 368 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 CENPPQ6IPU0 288 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 KLHL10Q6JEL2 608 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 FAM117BQ6P1L5 589 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 AGMOQ6ZNB7 445 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 THNSL1Q8IYQ7 743 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 POMGNT1Q8WZA1 660 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 TOP1MTQ969P6 601 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 SYAP1Q96A49 352 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-227ENST00000557269 SAAL1Q96ER3 474 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 ADPGKQ9BRR6 497 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 MSTO1Q9BUK6 570 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 APOL6Q9BWW8 343 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 TYW1Q9NV66 732 aaKnown RBP14.01□□□□□ -0.17
SHMT2-227ENST00000557269 SNTG2Q9NY99 539 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 SLC4A7Q9Y6M7 1214 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 CEP290O15078 2479 aa14.01□□□□□ -0.17
SHMT2-227ENST00000557269 PDE4DIPQ5VU43 2346 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 GRXCR1A8MXD5 290 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 PDXKO00764 312 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 STAG3L1P0CL83 205 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 GRM5P41594 1212 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 KCNJ6P48051 423 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 ACOT2P49753 483 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 RAB27AP51159 221 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 STX17P56962 302 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 ZSCAN23Q3MJ62 389 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 CLLU1OSQ5K130 101 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 SLFN12LQ6IEE8 588 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 ARMCX5Q6P1M9 558 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 SASS6Q6UVJ0 657 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 CRELD2Q6UXH1 353 aaPredicted RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 FAM43BQ6ZT52 329 aaPredicted RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 NPAS4Q8IUM7 802 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 MLKLQ8NB16 471 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 NELFBQ8WX92 580 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 P2RX5Q93086 422 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 DHTKD1Q96HY7 919 aaPredicted RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 FUCA2Q9BTY2 467 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 GTPBP4Q9BZE4 634 aaKnown RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 TRIM6Q9C030 488 aaPredicted RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 ELAC1Q9H777 363 aaKnown RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 DMAC2Q9NW81 257 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 TMEM161AQ9NX61 479 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 HSPBP1Q9NZL4 362 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 KLK14Q9P0G3 267 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 AGO2Q9UKV8 859 aaKnown RBP14□□□□□ -0.17
SHMT2-227ENST00000557269 CTNND2Q9UQB3 1225 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 TRAF3IP3Q9Y228 551 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 PCDHB7Q9Y5E2 793 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 COL4A6Q14031 1691 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 TTC3P53804 2025 aa14□□□□□ -0.17
SHMT2-227ENST00000557269 OGTO15294 1046 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 RECQL4O94761 1208 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 KIF20AO95235 890 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 EOMESO95936 686 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 NR3C1P04150 777 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 ITGA4P13612 1032 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 ATP2A2P16615 1042 aaKnown RBP13.99□□□□□ -0.17
SHMT2-227ENST00000557269 GARTP22102 1010 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 CCNE1P24864 410 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 CYP2J2P51589 502 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 WNT7BP56706 349 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 TYRO3Q06418 890 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 TTI2Q6NXR4 508 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 C11orf57Q6ZUT1 292 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-227ENST00000557269 HS2ST1Q7LGA3 356 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 HERC6Q8IVU3 1022 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 C12orf56Q8IXR9 622 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 EEF2KMTQ96G04 330 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 ZFP42Q96MM3 310 aa13.99□□□□□ -0.17
SHMT2-227ENST00000557269 DUSP9Q99956 384 aaKnown RBP13.99□□□□□ -0.17
SHMT2-227ENST00000557269 FAM213AQ9BRX8 229 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms