RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 AAASQ9NRG9 546 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 RNF19AQ9NV58 838 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 USP25Q9UHP3 1055 aa13.63□□□□□ -0.23
VPS33A-207ENST00000542790 MRPL42Q9Y6G3 142 aaKnown RBP13.63□□□□□ -0.23
VPS33A-207ENST00000542790 WDR81Q562E7 1941 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 FAM237AA0A1B0GTK4 181 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 K7ENM7 598 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 OFD1O75665 1012 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 NPTXRO95502 500 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 SLFN14P0C7P3 912 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 IDEP14735 1019 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 LONRF3Q496Y0 759 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 EPC2Q52LR7 807 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 HERC4Q5GLZ8 1057 aaPredicted RBP13.62□□□□□ -0.23
VPS33A-207ENST00000542790 AGMOQ6ZNB7 445 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 TAS1R3Q7RTX0 852 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 SPRED2Q7Z698 418 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 CCDC65Q8IXS2 484 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 LRRC43Q8N309 656 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 MRPS27Q92552 414 aaKnown RBP13.62□□□□□ -0.23
VPS33A-207ENST00000542790 STAMQ92783 540 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 DNAJC19Q96DA6 116 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 ACO2Q99798 780 aaKnown RBP13.62□□□□□ -0.23
VPS33A-207ENST00000542790 ST6GALNAC4Q9H4F1 302 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 RSAD1Q9HA92 442 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 TYW1Q9NV66 732 aaKnown RBP13.62□□□□□ -0.23
VPS33A-207ENST00000542790 KANSL3Q9P2N6 904 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 HPSEQ9Y251 543 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 TNFSF13BQ9Y275 285 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 USP20Q9Y2K6 914 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 EVPLQ92817 2033 aa13.62□□□□□ -0.23
VPS33A-207ENST00000542790 COL4A6Q14031 1691 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 FRMD3A2A2Y4 597 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 MEIS3P2A8K0S8 358 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 C5orf67F2Z3F1 127 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 EDN1P05305 212 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 LINC00271P0C7V0 271 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 FOSL2P15408 326 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 CTNNB1P35222 781 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 SYKP43405 635 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 GTF2BQ00403 316 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 CSPP1Q1MSJ5 1256 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 DCAF4L1Q3SXM0 396 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 NOMO2Q5JPE7 1267 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 SPOUT1Q5T280 376 aaKnown RBP13.61□□□□□ -0.23
VPS33A-207ENST00000542790 CNNM4Q6P4Q7 775 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 ZPBP2Q6X784 338 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 ZNF720Q7Z2F6 126 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 SFR1Q86XK3 245 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 ZNF454Q8N9F8 522 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 FSIP1Q8NA03 581 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 URGCPQ8TCY9 931 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 MYLIPQ8WY64 445 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 C7orf25Q9BPX7 421 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 TCHPQ9BT92 498 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 C11orf84Q9BUA3 381 aaPredicted RBP13.61□□□□□ -0.23
VPS33A-207ENST00000542790 TARS2Q9BW92 718 aaKnown RBP13.61□□□□□ -0.23
VPS33A-207ENST00000542790 TRIM9Q9C026 710 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 NXF3Q9H4D5 531 aaKnown RBP13.61□□□□□ -0.23
VPS33A-207ENST00000542790 MRPL44Q9H9J2 332 aaKnown RBP13.61□□□□□ -0.23
VPS33A-207ENST00000542790 PTPRHQ9HD43 1115 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 PANK4Q9NVE7 773 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 TBX20Q9UMR3 447 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 STXBP5LQ9Y2K9 1186 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 GIT1Q9Y2X7 761 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 HES2Q9Y543 173 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 PCDHB12Q9Y5F1 795 aa13.61□□□□□ -0.23
VPS33A-207ENST00000542790 ARID2Q68CP9 1835 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 H3BNC9 293 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 TOM1L1O75674 476 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 LAG3P18627 525 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 NMT1P30419 496 aaKnown RBP13.6□□□□□ -0.23
VPS33A-207ENST00000542790 NDUFA8P51970 172 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 TPRNQ4KMQ1 711 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 EEF1DP3Q658K8 133 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 LRRC55Q6ZSA7 311 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 P2RX5Q93086 422 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 BICD1Q96G01 975 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 FIZ1Q96SL8 496 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 APOL6Q9BWW8 343 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 OLFML3Q9NRN5 406 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 WDR70Q9NW82 654 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 PARP2Q9UGN5 583 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 SERTAD1Q9UHV2 236 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 INPP5FQ9Y2H2 1132 aa13.6□□□□□ -0.23
VPS33A-207ENST00000542790 CARNS1A5YM72 827 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 ARL5CA6NH57 179 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 EPOPA6NHQ4 379 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 RFXAPO00287 272 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 INPPL1O15357 1258 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 CLDN3O15551 220 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 ACTN4O43707 911 aaKnown RBP13.59□□□□□ -0.23
VPS33A-207ENST00000542790 MYL1P05976 194 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 MCF2P10911 925 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 POU3F3P20264 500 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-207ENST00000542790 IGFBP4P22692 258 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 PROZP22891 400 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 AKAP5P24588 427 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 AFMP43652 599 aa13.59□□□□□ -0.23
VPS33A-207ENST00000542790 ASIC1P78348 528 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms