RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ADSSP30520 456 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 NLRP12P59046 1061 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 NOLC1Q14978 699 aaKnown RBP eCLIP18.72■□□□□ 0.59
LIG1-204ENST00000542460 C9orf50Q5SZB4 431 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 RASIP1Q5U651 963 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 MRPL10Q7Z7H8 261 aaKnown RBP18.72■□□□□ 0.59
LIG1-204ENST00000542460 ECHDC2Q86YB7 292 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 MLKLQ8NB16 471 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 POMGNT1Q8WZA1 660 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 DHTKD1Q96HY7 919 aaPredicted RBP18.72■□□□□ 0.59
LIG1-204ENST00000542460 CDT1Q9H211 546 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 ELAC1Q9H777 363 aaKnown RBP18.72■□□□□ 0.59
LIG1-204ENST00000542460 TYW1Q9NV66 732 aaKnown RBP18.72■□□□□ 0.59
LIG1-204ENST00000542460 CXXC1Q9P0U4 656 aaPredicted RBP18.72■□□□□ 0.59
LIG1-204ENST00000542460 IPPQ9Y573 584 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 SLC4A7Q9Y6M7 1214 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 SZT2Q5T011 3432 aa18.72■□□□□ 0.59
LIG1-204ENST00000542460 PSMA7O14818 248 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 CD44P16070 742 aaKnown RBP18.71■□□□□ 0.59
LIG1-204ENST00000542460 SHHQ15465 462 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 HACE1Q8IYU2 909 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 SMG8Q8ND04 991 aaKnown RBP18.71■□□□□ 0.59
LIG1-204ENST00000542460 TOP1MTQ969P6 601 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 PGBD4Q96DM1 585 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 MSTO1Q9BUK6 570 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 HAPLN2Q9GZV7 340 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 AGPAT3Q9NRZ7 376 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 TMEM161AQ9NX61 479 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 TRAF3IP3Q9Y228 551 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 PCDHB7Q9Y5E2 793 aa18.71■□□□□ 0.59
LIG1-204ENST00000542460 STAG3L1P0CL83 205 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 DEFB103AP81534 67 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 KYAT1Q16773 422 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 ARMCX5Q6P1M9 558 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 ZNF598Q86UK7 904 aaKnown RBP18.7■□□□□ 0.58
LIG1-204ENST00000542460 NPAS4Q8IUM7 802 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 CRIPAKQ8N1N5 446 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 PHOSPHO2Q8TCD6 241 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 RNPC3Q96LT9 517 aaKnown RBP18.7■□□□□ 0.58
LIG1-204ENST00000542460 SEMA6BQ9H3T3 888 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 AGO2Q9UKV8 859 aaKnown RBP18.7■□□□□ 0.58
LIG1-204ENST00000542460 LRFN2Q9ULH4 789 aa18.7■□□□□ 0.58
LIG1-204ENST00000542460 KIAA0391O15091 583 aaKnown RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 OGTO15294 1046 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 CALUO43852 315 aaPredicted RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 HARSP12081 509 aaKnown RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 IBSPP21815 317 aaPredicted RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 CENPPQ6IPU0 288 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 C12orf56Q8IXR9 622 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 THNSL1Q8IYQ7 743 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 RNF169Q8NCN4 708 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 TMEM174Q8WUU8 243 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 SLC9A7Q96T83 725 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 CBWD1Q9BRT8 395 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 NXF3Q9H4D5 531 aaKnown RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 DACH1Q9UI36 760 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 HES2Q9Y543 173 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 CLIC2O15247 247 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 LDHAP00338 332 aaKnown RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 ITGA4P13612 1032 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 ATF7P17544 494 aaPredicted RBP18.69■□□□□ 0.58
LIG1-204ENST00000542460 CCNE1P24864 410 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 GRM5P41594 1212 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 DPCR1Q3MIW9 517 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 KLHL10Q6JEL2 608 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 P2RX5Q93086 422 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 TSG101Q99816 390 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 PCIF1Q9H4Z3 704 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 UBN1Q9NPG3 1134 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 ANO10Q9NW15 660 aa18.69■□□□□ 0.58
LIG1-204ENST00000542460 LAMA3Q16787 3333 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 UPP2O95045 317 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 ATP2A2P16615 1042 aaKnown RBP18.68■□□□□ 0.58
LIG1-204ENST00000542460 LRRC63Q05C16 580 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 MYBPC2Q14324 1141 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 STX1AQ16623 288 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 NFIL3Q16649 462 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 EDRF1Q3B7T1 1238 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 ZCWPW2Q504Y3 356 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 CT47A1Q5JQC4 288 aaPredicted RBP18.68■□□□□ 0.58
LIG1-204ENST00000542460 CEP120Q8N960 986 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 NELFBQ8WX92 580 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 CCDC94Q9BW85 323 aaPredicted RBP18.68■□□□□ 0.58
LIG1-204ENST00000542460 RNF39Q9H2S5 420 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 SNTG2Q9NY99 539 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 HSPBP1Q9NZL4 362 aa18.68■□□□□ 0.58
LIG1-204ENST00000542460 A0A1W2PPC1 479 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 BICDL2A1A5D9 508 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 SYCE3A1L190 88 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 HOXA2O43364 376 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 FAM189A1O60320 539 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 CLTAP09496 248 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 AKAP5P24588 427 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 RPL13P26373 211 aaKnown RBP18.67■□□□□ 0.58
LIG1-204ENST00000542460 YARSP54577 528 aaKnown RBP18.67■□□□□ 0.58
LIG1-204ENST00000542460 OSTNP61366 133 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 PAK1Q13153 545 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 HSP90AA2PQ14568 343 aaPredicted RBP18.67■□□□□ 0.58
LIG1-204ENST00000542460 ZSCAN23Q3MJ62 389 aa18.67■□□□□ 0.58
LIG1-204ENST00000542460 FOXR2Q6PJQ5 311 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms