RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 CA14Q9ULX7 337 aa8.16□□□□□ -1.1
YBX3-209ENST00000540747 USP24Q9UPU5 2620 aa8.16□□□□□ -1.1
YBX3-209ENST00000540747 F5P12259 2224 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 COL4A3Q01955 1670 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 TBX3O15119 743 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 ASAP2O43150 1006 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 ZMYND10O75800 440 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 DCNP07585 359 aaKnown RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 POU2F2P09086 479 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 SRGAP2CP0DJJ0 459 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 ITGA4P13612 1032 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 AXLP30530 894 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 OR1G1P47890 313 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 CCT2P78371 535 aaKnown RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 FGD1P98174 961 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 MBTD1Q05BQ5 628 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 EPHA7Q15375 998 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 INF2Q27J81 1249 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 PPP4R3AQ6IN85 833 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 FUT10Q6P4F1 479 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 NOTUMQ6P988 496 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 ELMSAN1Q6PJG2 1045 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 C1orf210Q8IVY1 113 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 EXOC8Q8IYI6 725 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 RNF149Q8NC42 400 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 RIN2Q8WYP3 895 aaPredicted RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 NELL1Q92832 810 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 CEP170P1Q96L14 293 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 B3GALT6Q96L58 329 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 FAM193BQ96PV7 902 aaPredicted RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 LXNQ9BS40 222 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 RPP25Q9BUL9 199 aaKnown RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 NFKBIZQ9BYH8 718 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 FOXQ1Q9C009 403 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 CSRNP2Q9H175 543 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 NXF3Q9H4D5 531 aaKnown RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.15□□□□□ -1.1
YBX3-209ENST00000540747 FBXW11Q9UKB1 542 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 GIT1Q9Y2X7 761 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 HES2Q9Y543 173 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 ZFP37Q9Y6Q3 630 aaPredicted RBP8.15□□□□□ -1.1
YBX3-209ENST00000540747 NUMBLQ9Y6R0 609 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 ZFHX4Q86UP3 3567 aa8.15□□□□□ -1.1
YBX3-209ENST00000540747 MTCL1Q9Y4B5 1905 aaKnown RBP8.15□□□□□ -1.11
YBX3-209ENST00000540747 ARID2Q68CP9 1835 aa8.15□□□□□ -1.11
YBX3-209ENST00000540747 CEP295Q9C0D2 2601 aa8.15□□□□□ -1.11
YBX3-209ENST00000540747 MAP1BP46821 2468 aaKnown RBP8.14□□□□□ -1.11
YBX3-209ENST00000540747 SHISA7A6NL88 538 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 SPDYE4A6NLX3 237 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 ZBTB39O15060 712 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 DKC1O60832 514 aaKnown RBP eCLIP8.14□□□□□ -1.11
YBX3-209ENST00000540747 LRRN2O75325 713 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 LYPLA2O95372 231 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 DEXIO95424 95 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 SPATA31D3P0C874 917 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 GCFC2P16383 781 aaKnown RBP8.14□□□□□ -1.11
YBX3-209ENST00000540747 ARF4P18085 180 aaPredicted RBP8.14□□□□□ -1.11
YBX3-209ENST00000540747 RPL17P18621 184 aaKnown RBP8.14□□□□□ -1.11
YBX3-209ENST00000540747 YWHABP31946 246 aaKnown RBP8.14□□□□□ -1.11
YBX3-209ENST00000540747 ARL2P36404 184 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 CAPSQ13938 189 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 PUM1Q14671 1186 aaKnown RBP eCLIP8.14□□□□□ -1.11
YBX3-209ENST00000540747 NAB2Q15742 525 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 USP41Q3LFD5 358 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 ZNF528Q3MIS6 628 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 RTP2Q5QGT7 225 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 DCLRE1AQ6PJP8 1040 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 SPATA31D4Q6ZUB0 917 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 DGLUCYQ7Z3D6 616 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 KRT25Q7Z3Z0 450 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 KIAA2013Q8IYS2 634 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 ASAP3Q8TDY4 903 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 TCP11Q8WWU5 503 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 RUBCNQ92622 972 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 FGF14Q92915 247 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 CPB2Q96IY4 423 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 PHF20Q9BVI0 1012 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 ZSWIM6Q9HCJ5 1215 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 RGL1Q9NZL6 768 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 ADAM28Q9UKQ2 775 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 CDH7Q9ULB5 785 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 SIT1Q9Y3P8 196 aa8.14□□□□□ -1.11
YBX3-209ENST00000540747 NOTCH4Q99466 2003 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 PATJQ8NI35 1801 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 CFAP47Q6ZTR5 3102 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 A0A1B0GUA9 196 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 B4GALT5O43286 388 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 LILRB5O75023 590 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 ERLIN2O94905 339 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 SLITRK3O94933 977 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 HNRNPA1P09651 372 aaKnown RBP eCLIP8.13□□□□□ -1.11
YBX3-209ENST00000540747 MYBP10242 640 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 GLRA2P23416 452 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 HOXA9P31269 272 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 GPC5P78333 572 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 NTHL1P78549 312 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 CREMQ03060 361 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 SSRP1Q08945 709 aaKnown RBP8.13□□□□□ -1.11
YBX3-209ENST00000540747 GRIK3Q13003 919 aa8.13□□□□□ -1.11
YBX3-209ENST00000540747 MXD4Q14582 209 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms