RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GLI3P10071 1580 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FAM237AA0A1B0GTK4 181 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ANP32DO95626 131 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ATF7P17544 494 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 VAMP7P51809 220 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 IFRD2Q12894 506 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SEMA3FQ13275 785 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CCDC105Q8IYK2 499 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MCUR1Q96AQ8 359 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DNAJC19Q96DA6 116 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NT5C1BQ96P26 610 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PSMD1Q99460 953 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 HOMER3Q9NSC5 361 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 AHDC1Q5TGY3 1603 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RCCD1A6NED2 376 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 H0Y3Z8 333 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RGL2O15211 777 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PTPRAP18433 802 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TGFB2P61812 414 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 VGLL4Q14135 290 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ARSHQ5FYA8 562 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PDXDC1Q6P996 788 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPATA4Q8NEY3 305 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 HAUS1Q96CS2 278 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SEC16BQ96JE7 1060 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 HSPBP1Q9NZL4 362 aa11.5□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPATA31C1P0DKV0 1188 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SNHG28P0DPA3 235 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MYBL1P10243 752 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TXNP10599 105 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LAMB3Q13751 1172 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 C7orf31Q8N865 590 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPIRE2Q8WWL2 714 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NLRP7Q8WX94 980 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MKL1Q969V6 931 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 HEMGNQ9BXL5 484 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DDX47Q9H0S4 455 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NRBP2Q9NSY0 501 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 AMFRQ9UKV5 643 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PCNTO95613 3336 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CICQ96RK0 1608 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ANO9A1A5B4 782 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SYF2O95926 243 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GJB1P08034 283 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MAGOHP61326 146 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 UGCGQ16739 394 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TMEM270Q6UE05 265 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DHX38Q92620 1227 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 COPS5Q92905 334 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KAT5Q92993 513 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MAGOHBQ96A72 148 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CCDC77Q9BR77 488 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 A1CFQ9NQ94 594 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CEP72Q9P209 647 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PDE6CP51160 858 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ACTR2P61160 394 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NFX1Q12986 1120 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 INTS2Q9H0H0 1204 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PAPOLBQ9NRJ5 636 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 AGPAT3Q9NRZ7 376 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KLHL11Q9NVR0 708 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CHCHD3Q9NX63 227 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RGS17Q9UGC6 210 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MCM8Q9UJA3 840 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ATP8A1Q9Y2Q0 1164 aa11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 COL16A1Q07092 1604 aaPredicted RBP11.49□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PITPNM2Q9BZ72 1349 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PHF20L1A8MW92 1017 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 THAP12O43422 761 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 STX2P32856 288 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 AARSP49588 968 aaKnown RBP eCLIP11.48□□□□□ -0.572e-6■■■■■ 54.8
MSH5-SAPCD1-207ENST00000493662 STAT5BP51692 787 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PPP2R2AP63151 447 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DYNLT1P63172 113 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KRT76Q01546 638 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DYNC1I2Q13409 638 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 VPS52Q8N1B4 723 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PAF1Q8N7H5 531 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 STAMBPL1Q96FJ0 436 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 BTBD6Q96KE9 485 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CNOT10Q9H9A5 744 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 AKAP11Q9UKA4 1901 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KLRG2A4D1S0 409 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CFAP73A6NFT4 308 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CLDN3O15551 220 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GNAT1P11488 350 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CDC25CP30307 473 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CTCFP49711 727 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RASSF2P50749 326 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CCNHP51946 323 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 HERVK_113P62684 666 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DLG4P78352 724 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DHX9Q08211 1270 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PGM5Q15124 567 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TREML2Q5T2D2 321 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPOPLQ6IQ16 392 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FAM83AQ86UY5 434 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ASIC3Q9UHC3 531 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 hCG_2014768A0A024R1R8 64 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms