RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 FIZ1Q96SL8 496 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 TMEM175Q9BSA9 504 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 NXF3Q9H4D5 531 aaKnown RBP13.02□□□□□ -0.33
VPS52-213ENST00000461743 TYW1Q9NV66 732 aaKnown RBP13.02□□□□□ -0.33
VPS52-213ENST00000461743 TBC1D13Q9NVG8 400 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 UNC80Q8N2C7 3258 aa13.02□□□□□ -0.33
VPS52-213ENST00000461743 SFI1A8K8P3 1242 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 POLR2DO15514 142 aaKnown RBP13.01□□□□□ -0.33
VPS52-213ENST00000461743 TOM1L1O75674 476 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 MYL1P05976 194 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 MCF2P10911 925 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 LIG1P18858 919 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 GTF2BQ00403 316 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 PLCB3Q01970 1234 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 RNASELQ05823 741 aaKnown RBP13.01□□□□□ -0.33
VPS52-213ENST00000461743 GRIK3Q13003 919 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 NOLC1Q14978 699 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS52-213ENST00000461743 KYAT1Q16773 422 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 ZNF568Q3ZCX4 644 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 LRRC55Q6ZSA7 311 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 MAP4K3Q8IVH8 894 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 CCDC65Q8IXS2 484 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 DHX58Q96C10 678 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 IPO9Q96P70 1041 aaKnown RBP13.01□□□□□ -0.33
VPS52-213ENST00000461743 TRIM9Q9C026 710 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 POLD4Q9HCU8 107 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 PTPRHQ9HD43 1115 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 KCNH3Q9ULD8 1083 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 HPSEQ9Y251 543 aa13.01□□□□□ -0.33
VPS52-213ENST00000461743 VWA8A3KMH1 1905 aa13□□□□□ -0.33
VPS52-213ENST00000461743 MTCL1Q9Y4B5 1905 aaKnown RBP13□□□□□ -0.33
VPS52-213ENST00000461743 UBE4BO95155 1302 aa13□□□□□ -0.33
VPS52-213ENST00000461743 FSD2A1L4K1 749 aa13□□□□□ -0.33
VPS52-213ENST00000461743 ARL5CA6NH57 179 aa13□□□□□ -0.33
VPS52-213ENST00000461743 TTLL13PA6NNM8 815 aa13□□□□□ -0.33
VPS52-213ENST00000461743 MEIS3P2A8K0S8 358 aa13□□□□□ -0.33
VPS52-213ENST00000461743 HNRNPDLO14979 420 aaKnown RBP13□□□□□ -0.33
VPS52-213ENST00000461743 PPP1R37O75864 691 aa13□□□□□ -0.33
VPS52-213ENST00000461743 ITGB1P05556 798 aa13□□□□□ -0.33
VPS52-213ENST00000461743 PFKFB1P16118 471 aa13□□□□□ -0.33
VPS52-213ENST00000461743 IGFBP4P22692 258 aa13□□□□□ -0.33
VPS52-213ENST00000461743 MLH1P40692 756 aa13□□□□□ -0.33
VPS52-213ENST00000461743 GRM5P41594 1212 aa13□□□□□ -0.33
VPS52-213ENST00000461743 EEF1DP3Q658K8 133 aa13□□□□□ -0.33
VPS52-213ENST00000461743 PDE12Q6L8Q7 609 aaKnown RBP13□□□□□ -0.33
VPS52-213ENST00000461743 KCNT2Q6UVM3 1135 aa13□□□□□ -0.33
VPS52-213ENST00000461743 STXBP4Q6ZWJ1 553 aa13□□□□□ -0.33
VPS52-213ENST00000461743 DYMQ7RTS9 669 aa13□□□□□ -0.33
VPS52-213ENST00000461743 SFR1Q86XK3 245 aa13□□□□□ -0.33
VPS52-213ENST00000461743 THNSL1Q8IYQ7 743 aa13□□□□□ -0.33
VPS52-213ENST00000461743 CEP57L1Q8IYX8 460 aa13□□□□□ -0.33
VPS52-213ENST00000461743 MRPS27Q92552 414 aaKnown RBP13□□□□□ -0.33
VPS52-213ENST00000461743 PPP2R3CQ969Q6 453 aa13□□□□□ -0.33
VPS52-213ENST00000461743 BICD1Q96G01 975 aa13□□□□□ -0.33
VPS52-213ENST00000461743 RPS6KC1Q96S38 1066 aa13□□□□□ -0.33
VPS52-213ENST00000461743 C7orf25Q9BPX7 421 aa13□□□□□ -0.33
VPS52-213ENST00000461743 CDT1Q9H211 546 aa13□□□□□ -0.33
VPS52-213ENST00000461743 ZHX3Q9H4I2 956 aa13□□□□□ -0.33
VPS52-213ENST00000461743 TOPORSQ9NS56 1045 aaPredicted RBP13□□□□□ -0.33
VPS52-213ENST00000461743 TBX20Q9UMR3 447 aa13□□□□□ -0.33
VPS52-213ENST00000461743 PLAGL2Q9UPG8 496 aa13□□□□□ -0.33
VPS52-213ENST00000461743 INPP5FQ9Y2H2 1132 aa13□□□□□ -0.33
VPS52-213ENST00000461743 GTF3C5Q9Y5Q8 519 aaPredicted RBP13□□□□□ -0.33
VPS52-213ENST00000461743 ABLIM1O14639 778 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 ZC3H11AO75152 810 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS52-213ENST00000461743 FGF18O76093 207 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 RECQL4O94761 1208 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 SLFN14P0C7P3 912 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 ALDH7A1P49419 539 aaKnown RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 BCAR1P56945 870 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 MCL1Q07820 350 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 DSC1Q08554 894 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 CDR2LQ86X02 465 aaPredicted RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 SLC39A11Q8N1S5 342 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 KLHL23Q8NBE8 558 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 CCDC34Q96HJ3 373 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 FAM193BQ96PV7 902 aaPredicted RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 GAD1Q99259 594 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 CCDC94Q9BW85 323 aaPredicted RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 TARS2Q9BW92 718 aaKnown RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 PANK2Q9BZ23 570 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 NSUN3Q9H649 340 aaKnown RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 MRPL44Q9H9J2 332 aaKnown RBP12.99□□□□□ -0.33
VPS52-213ENST00000461743 PANK4Q9NVE7 773 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 SPG21Q9NZD8 308 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 EXOC7Q9UPT5 735 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 HES2Q9Y543 173 aa12.99□□□□□ -0.33
VPS52-213ENST00000461743 RFXAPO00287 272 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 EIF3DO15371 548 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS52-213ENST00000461743 CLDN3O15551 220 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 ACTN4O43707 911 aaKnown RBP12.98□□□□□ -0.33
VPS52-213ENST00000461743 NR1I2O75469 434 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 IDEP14735 1019 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 SYKP43405 635 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 LIG4P49917 911 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 SCNN1GP51170 649 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 YARSP54577 528 aaKnown RBP12.98□□□□□ -0.33
VPS52-213ENST00000461743 ASIC1P78348 528 aa12.98□□□□□ -0.33
VPS52-213ENST00000461743 KRT17Q04695 432 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms