RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CCND1P24385 295 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 NEK2P51955 445 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 SAFB2Q14151 953 aaKnown RBP eCLIP5.34□□□□□ -1.55
USP40-209ENST00000452724 RRP1BQ14684 758 aaKnown RBP5.34□□□□□ -1.55
USP40-209ENST00000452724 ADRM1Q16186 407 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 ANO4Q32M45 955 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 MFSD5Q6N075 450 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 FAM111BQ6SJ93 734 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 ZBTB46Q86UZ6 589 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PNMA8AQ86V59 439 aaPredicted RBP5.34□□□□□ -1.55
USP40-209ENST00000452724 ARL8AQ96BM9 186 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 CHMP4CQ96CF2 233 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PAWRQ96IZ0 340 aaKnown RBP5.34□□□□□ -1.55
USP40-209ENST00000452724 IL23AQ9NPF7 189 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 REXO2Q9Y3B8 237 aaKnown RBP5.34□□□□□ -1.55
USP40-209ENST00000452724 SH3BP1Q9Y3L3 701 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PCDHGA9Q9Y5G4 932 aaKnown RBP5.34□□□□□ -1.55
USP40-209ENST00000452724 PCDHGA8Q9Y5G5 932 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PCDHGA7Q9Y5G6 932 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PCDHGA6Q9Y5G7 932 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PCDHGA3Q9Y5H0 932 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 PCDHGA2Q9Y5H1 932 aa5.34□□□□□ -1.55
USP40-209ENST00000452724 UBE2QL1A1L167 161 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 TMEM127O75204 238 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 ALDH1A2O94788 518 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 TOX4O94842 621 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 S100BP04271 92 aaPredicted RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 LTA4HP09960 611 aaKnown RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 KIR2DL3P43628 341 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 MAN2A2P49641 1150 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 MEF2AQ02078 507 aaPredicted RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 ACAP1Q15027 740 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 TTF1Q15361 905 aaPredicted RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 ELAVL1Q15717 326 aaKnown RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 ODR4Q5SWX8 454 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 BTNL9Q6UXG8 535 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 GLB1L3Q8NCI6 653 aaPredicted RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 NEU4Q8WWR8 484 aaPredicted RBP5.33□□□□□ -1.56
USP40-209ENST00000452724 JADE3Q92613 823 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 FATE1Q969F0 183 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 SLC2A13Q96QE2 648 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 GPHA2Q96T91 129 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 ZBTB21Q9ULJ3 1066 aa5.33□□□□□ -1.56
USP40-209ENST00000452724 MTSS1O43312 755 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 PRAMEF4O60810 478 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 IPO13O94829 963 aaKnown RBP5.32□□□□□ -1.56
USP40-209ENST00000452724 SNUPNO95149 360 aaKnown RBP5.32□□□□□ -1.56
USP40-209ENST00000452724 INHBCP55103 352 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 DPTQ07507 201 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 MALLQ13021 153 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 UBE3CQ15386 1083 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 MUM1L1Q5H9M0 696 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 FKBP15Q5T1M5 1219 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 SPTY2D1Q68D10 685 aaPredicted RBP5.32□□□□□ -1.56
USP40-209ENST00000452724 TAS1R1Q7RTX1 841 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 MSL3Q8N5Y2 521 aaKnown RBP5.32□□□□□ -1.56
USP40-209ENST00000452724 TEKT5Q96M29 485 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 GREM2Q9H772 168 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 AASDHPPTQ9NRN7 309 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 ING3Q9NXR8 418 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 NCDNQ9UBB6 729 aa5.32□□□□□ -1.56
USP40-209ENST00000452724 MFAP3LO75121 409 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 NDUFS2O75306 463 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 C5AR1P21730 350 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 CTSSP25774 331 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 RECQLP46063 649 aaPredicted RBP5.31□□□□□ -1.56
USP40-209ENST00000452724 NPEPPSP55786 919 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 ADAM8P78325 824 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 C19orf54Q5BKX5 351 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 CRB2Q5IJ48 1285 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 EFCAB2Q5VUJ9 269 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 IGFL4Q6B9Z1 124 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 ABHD15Q6UXT9 468 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 PPM1NQ8N819 430 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 SNX33Q8WV41 574 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 HOOK2Q96ED9 719 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 CHFRQ96EP1 664 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 GPR87Q9BY21 358 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 DMRT3Q9NQL9 472 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 CEP72Q9P209 647 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 SCOCQ9UIL1 159 aa5.31□□□□□ -1.56
USP40-209ENST00000452724 LUC7L2Q9Y383 392 aaKnown RBP5.31□□□□□ -1.56
USP40-209ENST00000452724 RPTORQ8N122 1335 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 GOLGA6L6A8MZA4 724 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 NRP1O14786 923 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 GNAT2P19087 354 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 MCAMP43121 646 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 EPHB1P54762 984 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 WNT3AP56704 352 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 MCL1Q07820 350 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 ODF1Q14990 250 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 CMTM4Q8IZR5 234 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.3□□□□□ -1.56
USP40-209ENST00000452724 GPR156Q8NFN8 814 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 RIN2Q8WYP3 895 aaPredicted RBP5.3□□□□□ -1.56
USP40-209ENST00000452724 ADI1Q9BV57 179 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 MMRN2Q9H8L6 949 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 TUBD1Q9UJT1 453 aa5.3□□□□□ -1.56
USP40-209ENST00000452724 THRAP3Q9Y2W1 955 aaKnown RBP5.3□□□□□ -1.56
USP40-209ENST00000452724 OVOL3O00110 214 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms