RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 KDSRQ06136 332 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 FMR1Q06787 632 aaKnown RBP eCLIP8.24□□□□□ -1.09
NEDD9-204ENST00000448183 NR1I3Q14994 352 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 CNGA3Q16281 694 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 IMPG1Q17R60 797 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 SLC27A3Q5K4L6 730 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 RHPN2Q8IUC4 686 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 TTC39CQ8N584 583 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 TC2NQ8N9U0 490 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 THAP11Q96EK4 314 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 NAF1Q96HR8 494 aaKnown RBP8.24□□□□□ -1.09
NEDD9-204ENST00000448183 SEC16BQ96JE7 1060 aa8.24□□□□□ -1.09
NEDD9-204ENST00000448183 ANKARQ7Z5J8 1434 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 UTYO14607 1347 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 GSG1L2A8MUP6 293 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 USP17L10C9JJH3 530 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 M0QYV0 167 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 TDP2O95551 362 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ITIH2P19823 946 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 SFNP31947 248 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 EXOSC10Q01780 885 aaKnown RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 FOXD4Q12950 439 aaPredicted RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ZNF568Q3ZCX4 644 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 CLEC4GQ6UXB4 293 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 DTX3LQ8TDB6 740 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 CEP95Q96GE4 821 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 PARVAQ9NVD7 372 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 CHCHD3Q9NX63 227 aaKnown RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 PHF2O75151 1096 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ZFXP17010 805 aaPredicted RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 SCP2P22307 547 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 KCNA4P22459 653 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 CYTH1Q15438 398 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 LRRC8EQ6NSJ5 796 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 RAD9BQ6WBX8 426 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 TRPM8Q7Z2W7 1104 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 NOP9Q86U38 636 aaKnown RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 MS4A14Q96JA4 679 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 UVRAGQ9P2Y5 699 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 NCAPD2Q15021 1401 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 GTPBP10A4D1E9 387 aaKnown RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 PSMD14O00487 310 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 STAT3P40763 770 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 GPC3P51654 580 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 USP11P51784 963 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 CDH6P55285 790 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 PDIA5Q14554 519 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 FASTKD1Q53R41 847 aaKnown RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 RCSD1Q6JBY9 416 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 MIGA2Q7L4E1 593 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 SLC44A5Q8NCS7 719 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 RMDN2Q96LZ7 410 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 RBM15Q96T37 977 aaKnown RBP eCLIP8.23□□□□□ -1.096e-7■■□□□ 13.6
NEDD9-204ENST00000448183 TRIM51Q9BSJ1 452 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 TSSK1BQ9BXA7 367 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ZNF341Q9BYN7 854 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 PPCSQ9HAB8 311 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ALG13Q9NP73 1137 aaKnown RBP8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ZFATQ9P243 1243 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 PRR36Q9H6K5 1346 aa8.23□□□□□ -1.09
NEDD9-204ENST00000448183 ORC4O43929 436 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 HUS1O60921 280 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 ENO1P06733 434 aaKnown RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 BAG6P46379 1132 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 GALCP54803 685 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 LRRC31Q6UY01 552 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 STOX1Q6ZVD7 989 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 PIGBQ92521 554 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 ARL8AQ96BM9 186 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 ERP27Q96DN0 273 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 CYFIP2Q96F07 1278 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 MTRQ99707 1265 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 RBM12Q9NTZ6 932 aaKnown RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 LRFN2Q9ULH4 789 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 KDM6BO15054 1643 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 TET3O43151 1660 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 LOC102724159A0A0B4J2E5 919 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 FAM47DPA6NHR8 397 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 FAM107AO95990 144 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 PHKA2P46019 1235 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 PWP2Q15269 919 aaKnown RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 QRICH1Q2TAL8 776 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 NBPF20Q3BBV1 942 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 FAM102AQ5T9C2 384 aaPredicted RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 LONP2Q86WA8 852 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 HNRNPLLQ8WVV9 542 aaKnown RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 PBXIP1Q96AQ6 731 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 IFT43Q96FT9 208 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 KCNK16Q96T55 309 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 TEX12Q9BXU0 123 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 FOXP3Q9BZS1 431 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 SLC8A2Q9UPR5 921 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 ABCA9Q8IUA7 1624 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 SNAP23O00161 211 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 SLC16A3O15427 465 aaKnown RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 RHOBTB3O94955 611 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 SERPINB10P48595 397 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 ALDH18A1P54886 795 aaKnown RBP8.22□□□□□ -1.09
NEDD9-204ENST00000448183 PRAMEP78395 509 aa8.22□□□□□ -1.09
NEDD9-204ENST00000448183 DPYDQ12882 1025 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms