RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ECT2Q9H8V3 914 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 RNF19AQ9NV58 838 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ZMYM2Q9UBW7 1377 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 PLCH1Q4KWH8 1693 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 EYA4O95677 639 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 POLR2MP0CAP2 368 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 BRAFP15056 766 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 GCFC2P16383 781 aaKnown RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 TNNI1P19237 187 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 STX2P32856 288 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 STAT2P52630 851 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 NOP14P78316 857 aaKnown RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 SMTNL2Q2TAL5 461 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 EDRF1Q3B7T1 1238 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 OTOP1Q7RTM1 612 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 SEPT12Q8IYM1 358 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 UBL4BQ8N7F7 174 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 KLHL29Q96CT2 875 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 HES6Q96HZ4 224 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 CRAMP1Q96RY5 1269 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 VPS37BQ9H9H4 285 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 NOD2Q9HC29 1040 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 PI4KBQ9UBF8 816 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 VAV3Q9UKW4 847 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 CTDP1Q9Y5B0 961 aaPredicted RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 RPTORQ8N122 1335 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ECE2O60344 883 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ATP9AO75110 1047 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 CCDC172P0C7W6 258 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 CETPP11597 493 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 LMNB1P20700 586 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ITGA8P53708 1063 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 FASTKD3Q14CZ7 662 aaKnown RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 DPY19L2P1Q6NXN4 242 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 CDCA7Q9BWT1 371 aaPredicted RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 STK33Q9BYT3 514 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 GPR88Q9GZN0 384 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 EPB41L4BQ9H329 900 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ARHGEF10LQ9HCE6 1279 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 FAM114A2Q9NRY5 505 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 HSPBP1Q9NZL4 362 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 SUCLA2Q9P2R7 463 aaPredicted RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 MTRF1LQ9UGC7 380 aaKnown RBP9.27□□□□□ -0.93
USP40-203ENST00000427112 CCPG1Q9ULG6 757 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 PDE4DIPQ5VU43 2346 aa9.27□□□□□ -0.93
USP40-203ENST00000427112 ANKRD62A6NC57 917 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 KRT15P19012 456 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 RRM1P23921 792 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 MAPK4P31152 587 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 GAD2Q05329 585 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 C1orf186Q6ZWK4 172 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 DAW1Q8N136 415 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 ANKS4BQ8N8V4 417 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 PPP1R13LQ8WUF5 828 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 NSMCE1Q8WV22 266 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 ZBTB10Q96DT7 871 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 RMDN2Q96LZ7 410 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 COL20A1Q9P218 1284 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 RASAL2Q9UJF2 1139 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 TMEM59LQ9UK28 342 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 TRAF3IP3Q9Y228 551 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 PFASO15067 1338 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 CCT8L1PA6NM43 557 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 CSDE1O75534 798 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 SNHG28P0DPA3 235 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 TARSP26639 723 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 IRX4P78413 519 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 FAM43BQ6ZT52 329 aaPredicted RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 HAUS6Q7Z4H7 955 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 EXOC3L1Q86VI1 746 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 MSL3Q8N5Y2 521 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 NETO2Q8NC67 525 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 KREMEN1Q96MU8 473 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 PABPC3Q9H361 631 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 METTL14Q9HCE5 456 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 SUFUQ9UMX1 484 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 ENO4A6NNW6 628 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 CHUKO15111 745 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 RALAP11233 206 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 EZRP15311 586 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 GPC5P78333 572 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 ADCY2Q08462 1091 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 MTMR3Q13615 1198 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 KCNT1Q5JUK3 1230 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 HOOK3Q86VS8 718 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 AGAP11Q8TF27 550 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 ZBTB45Q96K62 511 aaPredicted RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 METTL5Q9NRN9 209 aaKnown RBP9.26□□□□□ -0.93
USP40-203ENST00000427112 GRHL1Q9NZI5 618 aa9.26□□□□□ -0.93
USP40-203ENST00000427112 E2F8A0AVK6 867 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 CCDC188H7C350 402 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 HNRNPDLO14979 420 aaKnown RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 PPIP5K2O43314 1243 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 BBOX1O75936 387 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 FSBPO95073 299 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 BCRP11274 1271 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ITGB5P18084 799 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 JAM2P57087 298 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 PTENP60484 403 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ELF3P78545 371 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms