RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 GPR153Q6NV75 609 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 ZBTB33Q86T24 672 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 ZNF598Q86UK7 904 aaKnown RBP18.59■□□□□ 0.57
COL7A1-202ENST00000422991 ADSSL1Q8N142 457 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 CRIPAKQ8N1N5 446 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 SMG8Q8ND04 991 aaKnown RBP18.59■□□□□ 0.57
COL7A1-202ENST00000422991 LRCH3Q96II8 777 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 RNPC3Q96LT9 517 aaKnown RBP18.59■□□□□ 0.57
COL7A1-202ENST00000422991 TRIM6Q9C030 488 aaPredicted RBP18.59■□□□□ 0.57
COL7A1-202ENST00000422991 NXF3Q9H4D5 531 aaKnown RBP18.59■□□□□ 0.57
COL7A1-202ENST00000422991 IPPQ9Y573 584 aa18.59■□□□□ 0.57
COL7A1-202ENST00000422991 A0A0B4J269 797 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 CLDN3O15551 220 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 SKIP12755 728 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 CD44P16070 742 aaKnown RBP18.58■□□□□ 0.56
COL7A1-202ENST00000422991 ADSSP30520 456 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 SLFN12LQ6IEE8 588 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 MRPL10Q7Z7H8 261 aaKnown RBP18.58■□□□□ 0.56
COL7A1-202ENST00000422991 NPAS4Q8IUM7 802 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 TCHPQ9BT92 498 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 ELAC1Q9H777 363 aaKnown RBP18.58■□□□□ 0.56
COL7A1-202ENST00000422991 AGPAT3Q9NRZ7 376 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 TYW1Q9NV66 732 aaKnown RBP18.58■□□□□ 0.56
COL7A1-202ENST00000422991 TMEM161AQ9NX61 479 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 SLC4A7Q9Y6M7 1214 aa18.58■□□□□ 0.56
COL7A1-202ENST00000422991 FNDC1Q4ZHG4 1894 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 GBF1Q92538 1859 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 PPP1R3GB7ZBB8 358 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 FAM189A1O60320 539 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 HARSP12081 509 aaKnown RBP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 IBSPP21815 317 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 GARTP22102 1010 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 PPP1R2P41236 205 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 MATR3P43243 847 aaKnown RBP eCLIP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 SNRPFP62306 86 aaKnown RBP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 STIM1Q13586 685 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 ZCWPW2Q504Y3 356 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 HS2ST1Q7LGA3 356 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 GOLGA5Q8TBA6 731 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 SLC9A7Q96T83 725 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 MSTO1Q9BUK6 570 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 RNF216Q9NWF9 866 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 CGNQ9P2M7 1197 aaKnown RBP18.57■□□□□ 0.56
COL7A1-202ENST00000422991 HES2Q9Y543 173 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 CITO14578 2027 aa18.57■□□□□ 0.56
COL7A1-202ENST00000422991 PDXKO00764 312 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 OGTO15294 1046 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 EOMESO95936 686 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 GRM5P41594 1212 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 NLRP12P59046 1061 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 DPCR1Q3MIW9 517 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 ARMCX5Q6P1M9 558 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 C12orf56Q8IXR9 622 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 CEP120Q8N960 986 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 RNF169Q8NCN4 708 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 PHOSPHO2Q8TCD6 241 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 POMGNT1Q8WZA1 660 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 TOP1MTQ969P6 601 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 CBWD1Q9BRT8 395 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 SEMA6BQ9H3T3 888 aa18.56■□□□□ 0.56
COL7A1-202ENST00000422991 AGO2Q9UKV8 859 aaKnown RBP18.56■□□□□ 0.56
COL7A1-202ENST00000422991 ANK1P16157 1881 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 PDCD11Q14690 1871 aaKnown RBP18.55■□□□□ 0.56
COL7A1-202ENST00000422991 MEIS3P2A8K0S8 358 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 PSMA7O14818 248 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 STAG3L1P0CL83 205 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 ATP2A2P16615 1042 aaKnown RBP18.55■□□□□ 0.56
COL7A1-202ENST00000422991 CENPPQ6IPU0 288 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 AGMOQ6ZNB7 445 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 TMCO2Q7Z6W1 182 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-202ENST00000422991 HACE1Q8IYU2 909 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 MLKLQ8NB16 471 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 LPPQ93052 612 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 PGBD4Q96DM1 585 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 DHTKD1Q96HY7 919 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-202ENST00000422991 RNF39Q9H2S5 420 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 RNF19AQ9NV58 838 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 LRFN2Q9ULH4 789 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 TRAF3IP3Q9Y228 551 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 PCDHB7Q9Y5E2 793 aa18.55■□□□□ 0.56
COL7A1-202ENST00000422991 KIAA0391O15091 583 aaKnown RBP18.54■□□□□ 0.56
COL7A1-202ENST00000422991 CLIC2O15247 247 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 RECQL4O94761 1208 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 UPP2O95045 317 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 LETM1O95202 739 aaPredicted RBP18.54■□□□□ 0.56
COL7A1-202ENST00000422991 ITGA4P13612 1032 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 ZBTB41Q5SVQ8 909 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 SASS6Q6UVJ0 657 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 HERC6Q8IVU3 1022 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 TMEM192Q8IY95 271 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 THNSL1Q8IYQ7 743 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 TMEM174Q8WUU8 243 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 P2RX5Q93086 422 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 CCDC94Q9BW85 323 aaPredicted RBP18.54■□□□□ 0.56
COL7A1-202ENST00000422991 APOL6Q9BWW8 343 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 PCIF1Q9H4Z3 704 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 RC3H2Q9HBD1 1191 aaKnown RBP18.54■□□□□ 0.56
COL7A1-202ENST00000422991 SNTG2Q9NY99 539 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 HSPBP1Q9NZL4 362 aa18.54■□□□□ 0.56
COL7A1-202ENST00000422991 CTNND2Q9UQB3 1225 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms