RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 MPZL3Q6UWV2 235 aa22.26■■□□□ 1.15
PTCD3-202ENST00000409326 Q7L0L9 218 aa22.26■■□□□ 1.15
PTCD3-202ENST00000409326 CLP1Q92989 425 aaKnown RBP22.26■■□□□ 1.15
PTCD3-202ENST00000409326 BICD1Q96G01 975 aa22.26■■□□□ 1.15
PTCD3-202ENST00000409326 CCDC34Q96HJ3 373 aa22.26■■□□□ 1.15
PTCD3-202ENST00000409326 FGFBP2Q9BYJ0 223 aa22.26■■□□□ 1.15
PTCD3-202ENST00000409326 CDT1Q9H211 546 aa22.26■■□□□ 1.15
PTCD3-202ENST00000409326 MRPL42Q9Y6G3 142 aaKnown RBP22.26■■□□□ 1.15
PTCD3-202ENST00000409326 ZMYM2Q9UBW7 1377 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 HNRNPDLO14979 420 aaKnown RBP22.25■■□□□ 1.15
PTCD3-202ENST00000409326 OFD1O75665 1012 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 MYBP10242 640 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 LIG4P49917 911 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 FAM26FQ5R3K3 315 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 KANK3Q6NY19 840 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 SPRED2Q7Z698 418 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 LRRC43Q8N309 656 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 DEFB123Q8N688 67 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 SAMD11Q96NU1 681 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 APOL6Q9BWW8 343 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 MRPL9Q9BYD2 267 aaKnown RBP22.25■■□□□ 1.15
PTCD3-202ENST00000409326 RNF39Q9H2S5 420 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 RWDD3Q9Y3V2 267 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 PCDHB13Q9Y5F0 798 aa22.25■■□□□ 1.15
PTCD3-202ENST00000409326 PDCD11Q14690 1871 aaKnown RBP22.24■■□□□ 1.15
PTCD3-202ENST00000409326 KLRC4O43908 158 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 PRR29P0C7W0 189 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 MCF2P10911 925 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 UBE2HP62256 183 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 L1TD1Q5T7N2 865 aaKnown RBP22.24■■□□□ 1.15
PTCD3-202ENST00000409326 HPS3Q969F9 1004 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 ZBTB45Q96K62 511 aaPredicted RBP22.24■■□□□ 1.15
PTCD3-202ENST00000409326 TIGD1Q96MW7 591 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 FAM161BQ96MY7 647 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 C17orf80Q9BSJ5 609 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 TCHPQ9BT92 498 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 ANKFY1Q9P2R3 1169 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 GIT1Q9Y2X7 761 aa22.24■■□□□ 1.15
PTCD3-202ENST00000409326 TRANK1O15050 2925 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 INPPL1O15357 1258 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 NR1I2O75469 434 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 MCL1Q07820 350 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 DPYDQ12882 1025 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 NOLC1Q14978 699 aaKnown RBP eCLIP22.23■■□□□ 1.15
PTCD3-202ENST00000409326 NOMO2Q5JPE7 1267 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 LRRC55Q6ZSA7 311 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 STXBP4Q6ZWJ1 553 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 ZBTB33Q86T24 672 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 CWH43Q9H720 699 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 CERS4Q9HA82 394 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 TYW1Q9NV66 732 aaKnown RBP22.23■■□□□ 1.15
PTCD3-202ENST00000409326 SNTG2Q9NY99 539 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 INPP5FQ9Y2H2 1132 aa22.23■■□□□ 1.15
PTCD3-202ENST00000409326 EIF3DO15371 548 aaKnown RBP eCLIP22.22■■□□□ 1.15
PTCD3-202ENST00000409326 CLDN3O15551 220 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 PRPF40AO75400 957 aaKnown RBP22.22■■□□□ 1.15
PTCD3-202ENST00000409326 AKAP5P24588 427 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 MLH1P40692 756 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 KCNA1Q09470 495 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 GRIN2CQ14957 1233 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 POSTNQ15063 836 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 EPC2Q52LR7 807 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 SLC39A4Q6P5W5 647 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 TMEM192Q8IY95 271 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 URGCPQ8TCY9 931 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 ARNTL2Q8WYA1 636 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 GBP4Q96PP9 640 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 ACCSQ96QU6 501 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 GAD1Q99259 594 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 EXOC1Q9NV70 894 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 HCSTQ9UBK5 93 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 PARP2Q9UGN5 583 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 MTUS1Q9ULD2 1270 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 EXOC7Q9UPT5 735 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 PLXNA4Q9HCM2 1894 aa22.22■■□□□ 1.15
PTCD3-202ENST00000409326 ARL5CA6NH57 179 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 RECQL4O94761 1208 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 RPN1P04843 607 aaKnown RBP22.21■■□□□ 1.15
PTCD3-202ENST00000409326 CTNNB1P35222 781 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 GRM5P41594 1212 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 KMT5BQ4FZB7 885 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 EPM2AIP1Q7L775 607 aaPredicted RBP22.21■■□□□ 1.15
PTCD3-202ENST00000409326 CEP120Q8N960 986 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 GLIS3Q8NEA6 775 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 HAPLN2Q9GZV7 340 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 TBC1D13Q9NVG8 400 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 MTMR10Q9NXD2 777 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 KANSL3Q9P2N6 904 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 UBE4BO95155 1302 aa22.21■■□□□ 1.15
PTCD3-202ENST00000409326 ANK1P16157 1881 aa22.2■■□□□ 1.14
PTCD3-202ENST00000409326 EPOPA6NHQ4 379 aa22.2■■□□□ 1.14
PTCD3-202ENST00000409326 C5orf67F2Z3F1 127 aa22.2■■□□□ 1.14
PTCD3-202ENST00000409326 KINO60870 393 aaKnown RBP22.2■■□□□ 1.14
PTCD3-202ENST00000409326 PRPF6O94906 941 aaKnown RBP22.2■■□□□ 1.14
PTCD3-202ENST00000409326 HARSP12081 509 aaKnown RBP22.2■■□□□ 1.14
PTCD3-202ENST00000409326 LAG3P18627 525 aa22.2■■□□□ 1.14
PTCD3-202ENST00000409326 BMPR1AP36894 532 aa22.2■■□□□ 1.14
PTCD3-202ENST00000409326 MATR3P43243 847 aaKnown RBP eCLIP22.2■■□□□ 1.14
PTCD3-202ENST00000409326 AFF1P51825 1210 aaKnown RBP22.2■■□□□ 1.14
PTCD3-202ENST00000409326 SPOUT1Q5T280 376 aaKnown RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms