RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GADL1Q6ZQY3 521 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 STAG2Q8N3U4 1231 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 JADE3Q92613 823 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 C7orf25Q9BPX7 421 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 C17orf75Q9HAS0 396 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 BARHL2Q9NY43 387 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ZSWIM5Q9P217 1185 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ENOPH1Q9UHY7 261 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 HERC5Q9UII4 1024 aaKnown RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 A0A1B0GTH6 734 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SAC3D1A6NKF1 404 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 RALAP11233 206 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CDK8P49336 464 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 NPEPPSP55786 919 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 NAA20P61599 178 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 NR5A1Q13285 461 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SLC18A3Q16572 532 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 LRRC24Q50LG9 513 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SPDYCQ5MJ68 293 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 KIAA1841Q6NSI8 718 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 LRRC8EQ6NSJ5 796 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SLC30A9Q6PML9 568 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 RRM2BQ7LG56 351 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MYLK4Q86YV6 388 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CEP70Q8NHQ1 597 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 RMDN2Q96LZ7 410 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SERPINB12Q96P63 405 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MRPL1Q9BYD6 325 aaKnown RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 GREM2Q9H772 168 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 STMN3Q9NZ72 180 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SLAIN2Q9P270 581 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SNX24Q9Y343 169 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MYO5CQ9NQX4 1742 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SRRM3A6NNA2 597 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 GOLGA8RI6L899 631 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ANGPT2O15123 496 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 FCGR1AP12314 374 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 FBLN1P23142 703 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PGM1P36871 562 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 HADHAP40939 763 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 RAD23BP54727 409 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CDK17Q00537 523 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PDCLQ13371 301 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SNX17Q15036 470 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 BEND6Q5SZJ8 279 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CCDC137Q6PK04 289 aaKnown RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 NLRP9Q7RTR0 991 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ADAT2Q7Z6V5 191 aaKnown RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CABLES1Q8TDN4 633 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SCFD2Q8WU76 684 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 THAP11Q96EK4 314 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MED15Q96RN5 788 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PAGR1Q9BTK6 254 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 LRRC53A6NM62 1247 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 STRNO43815 780 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 LRRN2O75325 713 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 IL18RAPO95256 599 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ACSL3O95573 720 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SPRP35270 261 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CDC42BPGQ6DT37 1551 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PADI6Q6TGC4 694 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SRLQ86TD4 932 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 GDAP1Q8TB36 358 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 TUBGCP3Q96CW5 907 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 DACH2Q96NX9 599 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 NUP85Q9BW27 656 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PRRG3Q9BZD7 231 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF556Q9HAH1 456 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PARVBQ9HBI1 364 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 KRCC1Q9NPI7 259 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 NMRK1Q9NWW6 199 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 HDAC6Q9UBN7 1215 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PCDHA6Q9UN73 950 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PCDHB6Q9Y5E3 794 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PCDHA8Q9Y5H6 950 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ADGRA3Q8IWK6 1321 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ZMYM2Q9UBW7 1377 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 USP17L3A6NCW0 530 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 USP17L4A6NCW7 530 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ASB14A6NK59 587 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 TMEM253P0C7T8 217 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SRGNP10124 158 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MARK3P27448 753 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 STX5Q13190 355 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CCDC144BQ3MJ40 725 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 IZUMO3Q5VZ72 239 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CENPPQ6IPU0 288 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 USP17L2Q6R6M4 530 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 RGS9BPQ6ZS82 235 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 USP17L1Q7RTZ2 530 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MB21D2Q8IYB1 491 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SPATA4Q8NEY3 305 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 VPS37AQ8NEZ2 397 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 PARD3BQ8TEW8 1205 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 FAM161BQ96MY7 647 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ANLNQ9NQW6 1124 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 MAP3K20Q9NYL2 800 aaKnown RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 GRID1Q9ULK0 1009 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CHMP2BQ9UQN3 213 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 FAM47DPA6NHR8 397 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms