RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 EIF3DO15371 548 aaKnown RBP eCLIP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 CHRNA3P32297 505 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 MARCKSL1P49006 195 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 CYFIP1Q7L576 1253 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 RFX6Q8HWS3 928 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 GPD1LQ8N335 351 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 CCDC63Q8NA47 563 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 FLAD1Q8NFF5 587 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 MYCBPAPQ8TBZ2 947 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 MKL1Q969V6 931 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 SEC16BQ96JE7 1060 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 C9orf72Q96LT7 481 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 POLR3FQ9H1D9 316 aaPredicted RBP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 LRRC4CQ9HCJ2 640 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 SETD1AO15047 1707 aaKnown RBP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 DPEP1P16444 411 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 ATF7P17544 494 aaPredicted RBP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 ZNF844Q08AG5 666 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 SPP2Q13103 211 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 PPP2R5AQ15172 486 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 KYNUQ16719 465 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 MFSD4BQ5TF39 518 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 LLGL2Q6P1M3 1020 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 MSL3Q8N5Y2 521 aaKnown RBP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 PRMT1Q99873 361 aaKnown RBP5.28□□□□□ -1.56
SMAD4-202ENST00000398417 C10orf88Q9H8K7 445 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 SAYSD1Q9NPB0 183 aa5.28□□□□□ -1.56
SMAD4-202ENST00000398417 CAND2O75155 1236 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 KRT15P19012 456 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 CCND2P30279 289 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 YWHABP31946 246 aaKnown RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 PRKCIP41743 596 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 RPL21P46778 160 aaKnown RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 IFI35P80217 286 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 NBPF9Q3BBW0 867 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 PHLDB3Q6NSJ2 640 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SLC13A5Q86YT5 568 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ATP8B4Q8TF62 1192 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TMEM143Q96AN5 459 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 CHMP6Q96FZ7 201 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 GMCL1Q96IK5 515 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 FMO2Q99518 471 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SEMA4AQ9H3S1 761 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ERVK-5Q9HDB9 667 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TMX2Q9Y320 296 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 EIF4E1BA6NMX2 242 aaKnown RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 NR3C2P08235 984 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 RARAP10276 462 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ITIH3Q06033 890 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SNCBQ16143 134 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 VSIG1Q86XK7 387 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 FBXO25Q8TCJ0 367 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TAS1R2Q8TE23 839 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 GRK7Q8WTQ7 553 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 RUBCNQ92622 972 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 RIT2Q99578 217 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 IMPG2Q9BZV3 1241 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ITSN1Q15811 1721 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 IFNB1P01574 187 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 PSAPP07602 524 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 IGBP1P78318 339 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 EN1Q05925 392 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TRPC3Q13507 836 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 MAP7D1Q3KQU3 841 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 RSBN1LQ6PCB5 846 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 DCUN1D2Q6PH85 259 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 NCAPG2Q86XI2 1143 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SPATS2Q86XZ4 545 aaKnown RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ERP44Q9BS26 406 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ACTR5Q9H9F9 607 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 IGLV3-22A0A075B6J6 115 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 OPLAHO14841 1288 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 RPSAP08865 295 aaKnown RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 CHKAP35790 457 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 UGCGQ16739 394 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TATDN1Q6P1N9 297 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TAOK1Q7L7X3 1001 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 FMNL3Q8IVF7 1028 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 MSTO1Q9BUK6 570 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SYNCQ9H7C4 482 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ATP9AO75110 1047 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SCP2P22307 547 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 CRY2Q49AN0 593 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 UBAP2Q5T6F2 1119 aaKnown RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 FAM47EQ6ZV65 393 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 EPM2AIP1Q7L775 607 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ZNF354CQ86Y25 554 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TCP11Q8WWU5 503 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 JPH2Q9BR39 696 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 CHST7Q9NS84 486 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 NRBP2Q9NSY0 501 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 TTC7AQ9ULT0 858 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 AGTPBP1Q9UPW5 1226 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 NUMA1Q14980 2115 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 SLIT2O94813 1529 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 A0A0A6YYK5 440 aaPredicted RBP5.27□□□□□ -1.57
SMAD4-202ENST00000398417 FOXO6A8MYZ6 492 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 HSPA6P17066 643 aa5.27□□□□□ -1.57
SMAD4-202ENST00000398417 ABL2P42684 1182 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms