RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 MXI1P50539 228 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 GRAMD1AQ96CP6 724 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 MKNK1Q9BUB5 465 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 VIRMAQ69YN4 1812 aaKnown RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 CYP2D7A0A087X1C5 515 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 RASSF9O75901 435 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 A1BGP04217 495 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 CAV1Q03135 178 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 PACS2Q86VP3 889 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 USP44Q9H0E7 712 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 DAPK2Q9UIK4 370 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 RCOR1Q9UKL0 485 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 LAD1O00515 517 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 ASNA1O43681 348 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 TRIM49P0CI25 452 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 TRIM49CP0CI26 452 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 MAPK10P53779 464 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 ST13P5Q8NFI4 369 aaPredicted RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 ADGRA2Q96PE1 1338 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 NQO1P15559 274 aaKnown RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 SOX6P35712 828 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 SLC16A2P36021 539 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 CAPSLQ8WWF8 208 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 PRCCQ92733 491 aaPredicted RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 FAM162AQ96A26 154 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 OSBPL5Q9H0X9 879 aaPredicted RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 ZNF556Q9HAH1 456 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 APPL1Q9UKG1 709 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 DFFAO00273 331 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 TYK2P29597 1187 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 POTEAQ6S8J7 498 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 LIMA1Q9UHB6 759 aaKnown RBP9.22□□□□□ -0.93
USF3-201ENST00000316407 ARHGEF12Q9NZN5 1544 aa9.22□□□□□ -0.93
USF3-201ENST00000316407 PITPNM2Q9BZ72 1349 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 SERPINB5P36952 375 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 GCLMP48507 274 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 LRRC63Q05C16 580 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 LRRC24Q50LG9 513 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 E4F1Q66K89 784 aaPredicted RBP9.21□□□□□ -0.93
USF3-201ENST00000316407 OSCARQ8IYS5 282 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 HOXA13P31271 388 aaPredicted RBP9.21□□□□□ -0.93
USF3-201ENST00000316407 LRRC74AQ0VAA2 488 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 TSHZ1Q6ZSZ6 1077 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 FBXO11Q86XK2 927 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 CCDC134Q9H6E4 229 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 EML4Q9HC35 981 aaKnown RBP9.21□□□□□ -0.93
USF3-201ENST00000316407 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.21□□□□□ -0.93
USF3-201ENST00000316407 KLHL20Q9Y2M5 609 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 CYP21A2P08686 494 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 CNOT8Q9UFF9 292 aaKnown RBP9.21□□□□□ -0.93
USF3-201ENST00000316407 DNAJC12Q9UKB3 198 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 TSPAN9O75954 239 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 UBE2SQ16763 222 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 ULK4Q96C45 1275 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 LCMT1Q9UIC8 334 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 RTCBQ9Y3I0 505 aaKnown RBP9.21□□□□□ -0.93
USF3-201ENST00000316407 UHRF1BP1Q6BDS2 1440 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 CCDC78A2IDD5 438 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 FAM107AO95990 144 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 PSMC3P17980 439 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 ACAP1Q15027 740 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 TMEM270Q6UE05 265 aa9.21□□□□□ -0.93
USF3-201ENST00000316407 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.21□□□□□ -0.93
USF3-201ENST00000316407 LGR5O75473 907 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 GAP43P17677 238 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 NUDT2P50583 147 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 RSBN1Q5VWQ0 802 aaPredicted RBP9.21□□□□□ -0.94
USF3-201ENST00000316407 ADAM22Q9P0K1 906 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 PLA2G4BP0C869 781 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 COG2Q14746 738 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 XPO6Q96QU8 1125 aaKnown RBP9.21□□□□□ -0.94
USF3-201ENST00000316407 MAGEA13PA6NCF6 341 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 ZNF839A8K0R7 811 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 ERICH1Q86X53 443 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 AK8Q96MA6 479 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 KLHL4Q9C0H6 718 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.21□□□□□ -0.94
USF3-201ENST00000316407 TRIM13O60858 407 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 LLGL2Q6P1M3 1020 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 C16orf89Q6UX73 402 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 CELF4Q9BZC1 486 aaKnown RBP9.21□□□□□ -0.94
USF3-201ENST00000316407 AIPL1Q9NZN9 384 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 PPP1R14BQ96C90 147 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 DSEQ9UL01 958 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 PCDH11XQ9BZA7 1347 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 PCDH11YQ9BZA8 1340 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 CYTH3O43739 400 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 KLHL17Q6TDP4 642 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 BTBD7Q9P203 1132 aa9.21□□□□□ -0.94
USF3-201ENST00000316407 KIF24Q5T7B8 1368 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 ITGB3BPQ13352 177 aaPredicted RBP9.2□□□□□ -0.94
USF3-201ENST00000316407 SGSM3Q96HU1 749 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 URB2Q14146 1524 aaKnown RBP9.2□□□□□ -0.94
USF3-201ENST00000316407 INO80B-WBP1J3KQ70 363 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 ATP6V1G2O95670 118 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 CLPTM1O96005 669 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 FOXR1Q6PIV2 292 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 IZUMO2Q6UXV1 221 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 GINS4Q9BRT9 223 aa9.2□□□□□ -0.94
USF3-201ENST00000316407 INO80BQ9C086 356 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms