RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 ITGA4P13612 1032 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 MYOGP15173 224 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 GATMP50440 423 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 NOLC1Q14978 699 aaKnown RBP eCLIP24.45■■□□□ 1.51
HOXD4-201ENST00000306324 MRPL10Q7Z7H8 261 aaKnown RBP24.45■■□□□ 1.51
HOXD4-201ENST00000306324 NELFCDQ8IXH7 590 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 HACE1Q8IYU2 909 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 ABI1Q8IZP0 508 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 ZNF507Q8TCN5 953 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 SCFD1Q8WVM8 642 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 PBX4Q9BYU1 374 aa24.45■■□□□ 1.51
HOXD4-201ENST00000306324 NLRC5Q86WI3 1866 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 TISP43B9A030 160 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 ANKRD63C9JTQ0 380 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 HTRA4P83105 476 aaPredicted RBP24.45■■□□□ 1.5
HOXD4-201ENST00000306324 SMAD3P84022 425 aaKnown RBP24.45■■□□□ 1.5
HOXD4-201ENST00000306324 PAN2Q504Q3 1202 aaKnown RBP24.45■■□□□ 1.5
HOXD4-201ENST00000306324 SLC39A4Q6P5W5 647 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 SPATA20Q8TB22 786 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 RNF39Q9H2S5 420 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 CLSTN2Q9H4D0 955 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 MSRAQ9UJ68 235 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 GDAQ9Y2T3 454 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 PCDHA11Q9Y5I1 949 aa24.45■■□□□ 1.5
HOXD4-201ENST00000306324 UBE4BO95155 1302 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 COL4A6Q14031 1691 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 ABLIM1O14639 778 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 HOXA2O43364 376 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 MBD3O95983 291 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 MCF2P10911 925 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 AKAP5P24588 427 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 RAB30Q15771 203 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 AGMOQ6ZNB7 445 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 HELQQ8TDG4 1101 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 NUP62CLQ9H1M0 184 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 SNTG2Q9NY99 539 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 PARP2Q9UGN5 583 aa24.44■■□□□ 1.5
HOXD4-201ENST00000306324 TBKBP1A7MCY6 615 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 HOXD13P35453 343 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 OSTNP61366 133 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 MCL1Q07820 350 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 CLLU1OSQ5K130 101 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 ISM2Q6H9L7 571 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 THNSL1Q8IYQ7 743 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 CEP120Q8N960 986 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 ZNF689Q96CS4 500 aaPredicted RBP24.43■■□□□ 1.5
HOXD4-201ENST00000306324 HAPLN2Q9GZV7 340 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 RSAD1Q9HA92 442 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 RNF19AQ9NV58 838 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 YBX2Q9Y2T7 364 aaKnown RBP24.43■■□□□ 1.5
HOXD4-201ENST00000306324 KIAA1671Q9BY89 1806 aa24.43■■□□□ 1.5
HOXD4-201ENST00000306324 MYO9BQ13459 2157 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 ZMYM2Q9UBW7 1377 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 LCHNA4D1U4 455 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 DNAJB2P25686 324 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 BTG3Q14201 252 aaPredicted RBP24.42■■□□□ 1.5
HOXD4-201ENST00000306324 HABP4Q5JVS0 413 aaKnown RBP24.42■■□□□ 1.5
HOXD4-201ENST00000306324 SLFN12LQ6IEE8 588 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 GLB1LQ6UWU2 654 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 POMGNT1Q8WZA1 660 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 MSTO1Q9BUK6 570 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 GBP3Q9H0R5 595 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 RC3H2Q9HBD1 1191 aaKnown RBP24.42■■□□□ 1.5
HOXD4-201ENST00000306324 MAPK8IP1Q9UQF2 711 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 INPP5FQ9Y2H2 1132 aa24.42■■□□□ 1.5
HOXD4-201ENST00000306324 CHD9Q3L8U1 2897 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 CA3P07451 260 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 BMT2Q1RMZ1 405 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 SEZ6Q53EL9 994 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 ZNF658Q5TYW1 1059 aaPredicted RBP24.41■■□□□ 1.5
HOXD4-201ENST00000306324 SMYD4Q8IYR2 804 aaPredicted RBP24.41■■□□□ 1.5
HOXD4-201ENST00000306324 TMEM117Q9H0C3 514 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 NKX2-4Q9H2Z4 354 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 UBN1Q9NPG3 1134 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 MAN1B1Q9UKM7 699 aa24.41■■□□□ 1.5
HOXD4-201ENST00000306324 BIN1O00499 593 aa24.4■■□□□ 1.5
HOXD4-201ENST00000306324 SOX1O00570 391 aaPredicted RBP24.4■■□□□ 1.5
HOXD4-201ENST00000306324 GRM5P41594 1212 aa24.4■■□□□ 1.5
HOXD4-201ENST00000306324 KNOP1Q1ED39 458 aaKnown RBP24.4■■□□□ 1.5
HOXD4-201ENST00000306324 CASD1Q96PB1 797 aa24.4■■□□□ 1.5
HOXD4-201ENST00000306324 CCDC94Q9BW85 323 aaPredicted RBP24.4■■□□□ 1.5
HOXD4-201ENST00000306324 KLK14Q9P0G3 267 aa24.4■■□□□ 1.5
HOXD4-201ENST00000306324 KIAA1468Q9P260 1216 aa24.4■■□□□ 1.5
HOXD4-201ENST00000306324 A0A0B4J269 797 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 OFD1O75665 1012 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 RECQL4O94761 1208 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 KIF20AO95235 890 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 ADSSP30520 456 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 MLH1P40692 756 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 TMEM192Q8IY95 271 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 CMTR2Q8IYT2 770 aaKnown RBP24.39■■□□□ 1.5
HOXD4-201ENST00000306324 TIFAQ96CG3 184 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 ZFP42Q96MM3 310 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 GAD1Q99259 594 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 AGO2Q9UKV8 859 aaKnown RBP24.39■■□□□ 1.5
HOXD4-201ENST00000306324 GIT1Q9Y2X7 761 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 STYXL1Q9Y6J8 313 aa24.39■■□□□ 1.5
HOXD4-201ENST00000306324 ANK1P16157 1881 aa24.39■■□□□ 1.49
HOXD4-201ENST00000306324 PDCD11Q14690 1871 aaKnown RBP24.39■■□□□ 1.49
HOXD4-201ENST00000306324 RALGAPA2Q2PPJ7 1873 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms