RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PAK6Q9NQU5 681 aaPredicted RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 CNOT8Q9UFF9 292 aaKnown RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 SLC12A4Q9UP95 1085 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 NFIBO00712 420 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 GJB1P08034 283 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 EN2P19622 333 aaPredicted RBP11.15□□□□□ -0.62
UPF3B-201ENST00000276201 GBP1P32455 592 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 FMNL3Q8IVF7 1028 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 CCDC197Q8NCU1 140 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 BANK1Q8NDB2 785 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 N4BP2L2Q92802 583 aaPredicted RBP11.15□□□□□ -0.62
UPF3B-201ENST00000276201 DNAJC19Q96DA6 116 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 ZNF317Q96PQ6 595 aaPredicted RBP11.15□□□□□ -0.62
UPF3B-201ENST00000276201 PNMA2Q9UL42 364 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 RPTORQ8N122 1335 aa11.15□□□□□ -0.62
UPF3B-201ENST00000276201 FAM187AA6NFU0 413 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 KCNK3O14649 394 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 PPP1R11O60927 126 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 RTN2O75298 545 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 CCND3P30281 292 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 HPDP32754 393 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 TECP42680 631 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 RGS19P49795 217 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 POLR2FP61218 127 aaKnown RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 ELF3P78545 371 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 CNTN2Q02246 1040 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 TRADDQ15628 312 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 USH1GQ495M9 461 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 IRF2BP2Q7Z5L9 587 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 TRPV1Q8NER1 839 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 TPCN2Q8NHX9 752 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 RAB17Q9H0T7 212 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 RIOX1Q9H6W3 641 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 HMX1Q9NP08 348 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 HAUS2Q9NVX0 235 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 CYP39A1Q9NYL5 469 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 NOC2LQ9Y3T9 749 aaKnown RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 DAAM1Q9Y4D1 1078 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 LCTP09848 1927 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 PFASO15067 1338 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 CYBAP13498 195 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 ALADP13716 330 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 NAPAP54920 295 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 COASYQ13057 564 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 LETM2Q2VYF4 491 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 PPP1R18Q6NYC8 613 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 KLHL7Q8IXQ5 586 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 ANKS4BQ8N8V4 417 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 FAM133AQ8N9E0 248 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 CDK5RAP3Q96JB5 506 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 NEUROG2Q9H2A3 272 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 NOVA2Q9UNW9 492 aaKnown RBP11.14□□□□□ -0.63
UPF3B-201ENST00000276201 PCDHA2Q9Y5H9 948 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 BRCA2P51587 3418 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 NCANO14594 1321 aa11.14□□□□□ -0.63
UPF3B-201ENST00000276201 CCDC189A1A4V9 331 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 SMCO2A6NFE2 343 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 ZBTB5O15062 677 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 ATP6V1G2O95670 118 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 MMP13P45452 471 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 GJA8P48165 433 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 CALCRLQ16602 461 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 FAM26FQ5R3K3 315 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 NSMFQ6X4W1 530 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 FRMD5Q7Z6J6 570 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 FBXO11Q86XK2 927 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 METTL13Q8N6R0 699 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 U2AF1L4Q8WU68 220 aaKnown RBP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 DDX12PQ92771 950 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 CUL5Q93034 780 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 HPS3Q969F9 1004 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 EEF2KMTQ96G04 330 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 HES6Q96HZ4 224 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 DEFB118Q96PH6 123 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 PIGSQ96S52 555 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 TINF2Q9BSI4 451 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 NLRC4Q9NPP4 1024 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 ASTN1O14525 1302 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 KDM3AQ9Y4C1 1321 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 FRMD3A2A2Y4 597 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 SOWAHBA6NEL2 793 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 CEP104O60308 925 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 BAATQ14032 418 aaPredicted RBP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 SPRED3Q2MJR0 410 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 PRAMEF19Q5SWL8 479 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 KRT79Q5XKE5 535 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 SLC30A10Q6XR72 485 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 CPLX4Q7Z7G2 160 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 ZNF467Q7Z7K2 595 aaPredicted RBP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 CEP120Q8N960 986 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 TBCKQ8TEA7 893 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 ANKRD27Q96NW4 1050 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 NAP1L4Q99733 375 aaKnown RBP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 KCTD10Q9H3F6 313 aa11.13□□□□□ -0.63
UPF3B-201ENST00000276201 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 UTP11Q9Y3A2 253 aaKnown RBP11.13□□□□□ -0.63
UPF3B-201ENST00000276201 SGPL1O95470 568 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 TMOD1P28289 359 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms