RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SPATA33Q96N06 139 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 ZBED2Q9BTP6 218 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 ZDHHC9Q9Y397 364 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 SHROOM2Q13796 1616 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 ASB14A6NK59 587 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 DIAPH2O60879 1101 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 SRBD1Q8N5C6 995 aaKnown RBP14.37□□□□□ -0.11
SF3A1-201ENST00000215793 POLIQ9UNA4 740 aa14.37□□□□□ -0.11
SF3A1-201ENST00000215793 CFAP73A6NFT4 308 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 E5RI56 91 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 SCP2P22307 547 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 ACTR2P61160 394 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 METTL16Q86W50 562 aaKnown RBP14.36□□□□□ -0.11
SF3A1-201ENST00000215793 PLA2G12BQ9BX93 195 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 UVRAGQ9P2Y5 699 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 FBXL5Q9UKA1 691 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 SNX12Q9UMY4 172 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 RNF103-CHMP3A0A140T963 221 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 PPP1R12AO14974 1030 aaPredicted RBP14.36□□□□□ -0.11
SF3A1-201ENST00000215793 MCF2P10911 925 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 CAPRIN1Q14444 709 aaKnown RBP14.36□□□□□ -0.11
SF3A1-201ENST00000215793 EFTUD2Q15029 972 aaKnown RBP eCLIP14.36□□□□□ -0.113e-6■■■■□ 22.9
SF3A1-201ENST00000215793 SLC18A3Q16572 532 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 SMYD3Q9H7B4 428 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 SP110Q9HB58 689 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 ETNK1Q9HBU6 452 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 DGAT1O75907 488 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 ATP1A1P05023 1023 aaKnown RBP14.36□□□□□ -0.11
SF3A1-201ENST00000215793 AP2B1P63010 937 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 RAD51Q06609 339 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 AP1B1Q10567 949 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 TMEM259Q4ZIN3 620 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 HACD3Q9P035 362 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 WDR35Q9P2L0 1181 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 TBX3O15119 743 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 FOXN1O15353 648 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 STILQ15468 1287 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 E2F4Q16254 413 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 OR6P1Q8NGX9 317 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 NSUN4Q96CB9 384 aaKnown RBP14.36□□□□□ -0.11
SF3A1-201ENST00000215793 TEX12Q9BXU0 123 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 TRPV6Q9H1D0 765 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 SNX5Q9Y5X3 404 aa14.36□□□□□ -0.11
SF3A1-201ENST00000215793 A0A1B0GTH6 734 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 AP3B1O00203 1094 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ESRRBO95718 433 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 MAPRE2Q15555 327 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 MMP19Q99542 508 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 STK33Q9BYT3 514 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 TRIM54Q9BYV2 358 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 JPH1Q9HDC5 661 aaPredicted RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 MLXIPLQ9NP71 852 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 AARSP49588 968 aaKnown RBP eCLIP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 OCA2Q04671 838 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 BYSLQ13895 437 aaKnown RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 SCARF1Q14162 830 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 HIF1AQ16665 826 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ANO5Q75V66 913 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ADSSL1Q8N142 457 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 KIF12Q96FN5 646 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ASPSCR1Q9BZE9 553 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 AMACRQ9UHK6 382 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 USP27XA6NNY8 438 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 NEMP1O14524 444 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 CSPG5O95196 566 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 CHGBP05060 677 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 KITP10721 976 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 YWHABP31946 246 aaKnown RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 HSD17B4P51659 736 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 SBK1Q52WX2 424 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 C1orf54Q8WWF1 131 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ASIC4Q96FT7 647 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 TSC22D3Q99576 134 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 KCND2Q9NZV8 630 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 WARS2Q9UGM6 360 aaKnown RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 SYCE1LA8MT33 242 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 PIK3R2O00459 728 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ARSEP51690 589 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 CDK17Q00537 523 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 MXD4Q14582 209 aaPredicted RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 XKR3Q5GH77 459 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 STOX1Q6ZVD7 989 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 PID1Q7Z2X4 250 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 MTBPQ96DY7 904 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 WWP1Q9H0M0 922 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 MTMR4Q9NYA4 1195 aa14.35□□□□□ -0.11
SF3A1-201ENST00000215793 FARP1Q9Y4F1 1045 aaPredicted RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 USP42Q9H9J4 1324 aaKnown RBP14.35□□□□□ -0.11
SF3A1-201ENST00000215793 ADORA2BP29275 332 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 STAT5BP51692 787 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 CDC42EP1Q00587 391 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 KRT17Q04695 432 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 NCAPHQ15003 741 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 ATG9AQ7Z3C6 839 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 C7orf25Q9BPX7 421 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 PHF20Q9BVI0 1012 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 ZFATQ9P243 1243 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 ITIH6Q6UXX5 1313 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 APOL1O14791 398 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms