RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 BANF1O75531 89 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 CCNE2O96020 404 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 PRELPP51888 382 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 NRLP54845 237 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 PPP2R5CQ13362 524 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 AUHQ13825 339 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 ZBTB41Q5SVQ8 909 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 CAPN12Q6ZSI9 719 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 CCDC17Q96LX7 622 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 ZSWIM1Q9BR11 485 aa11.51□□□□□ -0.57
USP28-201ENST00000003302 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 BZW2Q9Y6E2 419 aaKnown RBP11.51□□□□□ -0.57
USP28-201ENST00000003302 KIAA0754O94854 1291 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 RPL13P26373 211 aaKnown RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 RARRES1P49788 294 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 GAD2Q05329 585 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 MGAT5Q09328 741 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 KIF22Q14807 665 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CPLX4Q7Z7G2 160 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 LDHDQ86WU2 507 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 ZNF526Q8TF50 670 aaPredicted RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 SCLT1Q96NL6 688 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 NUP85Q9BW27 656 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 HSPBP1Q9NZL4 362 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 ANKRD62A6NC57 917 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 ZSCAN5DPP0CG00 497 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 YY1P25490 414 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 KYNUQ16719 465 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CGB2Q6NT52 195 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 ARHGAP27Q6ZUM4 889 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 B4GALNT4Q76KP1 1039 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CEP57Q86XR8 500 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CARD9Q9H257 536 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 FGFR1OP2Q9NVK5 253 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 NUMBLQ9Y6R0 609 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 A0A0A6YYK5 440 aaPredicted RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 RIPK2O43353 540 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 GJC1P36383 396 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 VAMP7P51809 220 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 MOXD1Q6UVY6 613 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 TAB3Q8N5C8 712 aaPredicted RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 GMCL1P1Q8NEA9 526 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CCDC114Q96M63 670 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CDC42EP4Q9H3Q1 356 aaKnown RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 SLITRK6Q9H5Y7 841 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.5□□□□□ -0.57
USP28-201ENST00000003302 METTL14Q9HCE5 456 aaKnown RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 CCDC188H7C350 402 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 CES2O00748 559 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 TBX3O15119 743 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 PPP1R12BO60237 982 aaPredicted RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 ETS1P14921 441 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 LRIG3Q6UXM1 1119 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 LRRC45Q96CN5 670 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 MRRFQ96E11 262 aaKnown RBP11.5□□□□□ -0.57
USP28-201ENST00000003302 VEZTQ9HBM0 779 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 FRMD4BQ9Y2L6 1034 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 RIPK3Q9Y572 518 aa11.5□□□□□ -0.57
USP28-201ENST00000003302 C21orf2O43822 256 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 EDN1P05305 212 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 MMP13P45452 471 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 FASTKD3Q14CZ7 662 aaKnown RBP11.49□□□□□ -0.57
USP28-201ENST00000003302 TXNRD3NBQ6F5E7 133 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 ANKRD42Q8N9B4 389 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 GTPBP10A4D1E9 387 aaKnown RBP11.49□□□□□ -0.57
USP28-201ENST00000003302 TTLL13PA6NNM8 815 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 IVDP26440 423 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 VSTM1Q6UX27 236 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 CCDC105Q8IYK2 499 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 DDX1Q92499 740 aaKnown RBP11.49□□□□□ -0.57
USP28-201ENST00000003302 HVCN1Q96D96 273 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 C9orf72Q96LT7 481 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 RMDN2Q96LZ7 410 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 PAGR1Q9BTK6 254 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 FAM129AQ9BZQ8 928 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 UMODL1Q5DID0 1318 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 GOLGA6L7A0A1B0GV03 622 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 RPSAP08865 295 aaKnown RBP11.49□□□□□ -0.57
USP28-201ENST00000003302 VIL1P09327 827 aaKnown RBP11.49□□□□□ -0.57
USP28-201ENST00000003302 FGFR1P11362 822 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 SLC15A2Q16348 729 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 CC2D2BQ6DHV5 1058 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 TBC1D1Q86TI0 1168 aaPredicted RBP11.49□□□□□ -0.57
USP28-201ENST00000003302 HELQQ8TDG4 1101 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 TCP11Q8WWU5 503 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 ZNF516Q92618 1163 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 CNTNAP1P78357 1384 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 BRWD3Q6RI45 1802 aa11.49□□□□□ -0.57
USP28-201ENST00000003302 ARHGEF35A5YM69 484 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 C5orf60A6NFR6 353 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 FSTL1Q12841 308 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 PRAMEF18Q5VWM3 479 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 HS2ST1Q7LGA3 356 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 PSPC1Q8WXF1 523 aaKnown RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 LMNB1P20700 586 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 RRM1P23921 792 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 CTNNA2P26232 953 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 BTNL9Q6UXG8 535 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 HAUS6Q7Z4H7 955 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 CCDC26Q8TAB7 109 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms