RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeastyeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBX4YMR067C DAN1P47178 298 aa1.54□□□□□ -2.16
UBX4YMR067C SWT21P53873 357 aaPredicted RBP1.54□□□□□ -2.16
UBX4YMR067C YMR166CQ03829 368 aa1.54□□□□□ -2.16
UBX4YMR067C SUE1Q06524 206 aa1.54□□□□□ -2.16
UBX4YMR067C PSY3Q12318 242 aa1.54□□□□□ -2.16
UBX4YMR067C ATG5Q12380 294 aa1.54□□□□□ -2.16
UBX4YMR067C AEP1P32493 518 aa1.53□□□□□ -2.16
UBX4YMR067C PAN1P32521 1480 aa1.53□□□□□ -2.16
UBX4YMR067C UIP5P36137 443 aa1.53□□□□□ -2.16
UBX4YMR067C YJR146WP47174 117 aa1.53□□□□□ -2.16
UBX4YMR067C FCF1Q05498 189 aaPredicted RBP1.53□□□□□ -2.16
UBX4YMR067C RDS3Q06835 107 aaPredicted RBP1.53□□□□□ -2.16
UBX4YMR067C RPL31AP0C2H8 113 aaKnown RBP1.52□□□□□ -2.17
UBX4YMR067C BMH1P29311 267 aaKnown RBP1.52□□□□□ -2.17
UBX4YMR067C COY1P34237 679 aa1.52□□□□□ -2.17
UBX4YMR067C TPN1P53099 579 aa1.52□□□□□ -2.17
UBX4YMR067C MRS2Q01926 470 aa1.52□□□□□ -2.17
UBX4YMR067C GRH1Q04410 372 aaKnown RBP1.52□□□□□ -2.17
UBX4YMR067C SAM4Q08985 325 aaKnown RBP1.52□□□□□ -2.17
UBX4YMR067C APC9Q12107 265 aa1.52□□□□□ -2.17
UBX4YMR067C RRP42Q12277 265 aaPredicted RBP1.52□□□□□ -2.17
UBX4YMR067C YPR064WQ12492 139 aa1.52□□□□□ -2.17
UBX4YMR067C ISD11Q6Q560 94 aa1.52□□□□□ -2.17
UBX4YMR067C COG3P40094 801 aa1.51□□□□□ -2.17
UBX4YMR067C GDS1P41913 522 aa1.51□□□□□ -2.17
UBX4YMR067C RPE1P46969 238 aa1.51□□□□□ -2.17
UBX4YMR067C YPT32P51996 222 aaKnown RBP1.51□□□□□ -2.17
UBX4YMR067C STE23Q06010 1027 aa1.51□□□□□ -2.17
UBX4YMR067C CTS2Q06350 511 aa1.51□□□□□ -2.17
UBX4YMR067C EMC6Q12431 108 aa1.51□□□□□ -2.17
UBX4YMR067C TDH1P00360 332 aaKnown RBP1.5□□□□□ -2.17
UBX4YMR067C RAD7P06779 565 aa1.5□□□□□ -2.17
UBX4YMR067C PHO89P38361 574 aa1.5□□□□□ -2.17
UBX4YMR067C YHI9P38765 294 aa1.5□□□□□ -2.17
UBX4YMR067C SHQ1P40486 507 aaPredicted RBP1.5□□□□□ -2.17
UBX4YMR067C MRPL49P40858 161 aaPredicted RBP1.5□□□□□ -2.17
UBX4YMR067C COG7P53195 279 aa1.5□□□□□ -2.17
UBX4YMR067C COS6P53344 381 aa1.5□□□□□ -2.17
UBX4YMR067C YPL150WQ12152 901 aa1.5□□□□□ -2.17
UBX4YMR067C YPR1Q12458 312 aa1.5□□□□□ -2.17
UBX4YMR067C YEL009C-AA0A023PZF2 135 aa1.49□□□□□ -2.17
UBX4YMR067C CDC37P06101 506 aaKnown RBP1.49□□□□□ -2.17
UBX4YMR067C KRE6P32486 720 aa1.49□□□□□ -2.17
UBX4YMR067C GRE3P38715 327 aaKnown RBP RIP-Chip data1.49□□□□□ -2.17not detected
UBX4YMR067C APE4P38821 490 aa1.49□□□□□ -2.17
UBX4YMR067C SEN34P39707 275 aa1.49□□□□□ -2.17
UBX4YMR067C NAS2P40555 220 aa1.49□□□□□ -2.17
UBX4YMR067C COX16P47081 118 aa1.49□□□□□ -2.17
UBX4YMR067C YML018CQ03730 393 aa1.49□□□□□ -2.17
UBX4YMR067C DCR2Q05924 578 aa1.49□□□□□ -2.17
UBX4YMR067C PBP4Q07362 185 aaKnown RBP1.49□□□□□ -2.17
UBX4YMR067C YOR268CQ08734 132 aa1.49□□□□□ -2.17
UBX4YMR067C RPL5P26321 297 aaKnown RBP1.48□□□□□ -2.17
UBX4YMR067C ERG2P32352 222 aa1.48□□□□□ -2.17
UBX4YMR067C SMI1P32566 505 aa1.48□□□□□ -2.17
UBX4YMR067C SUA5P32579 426 aa1.48□□□□□ -2.17
UBX4YMR067C CAT2P32796 670 aaKnown RBP1.48□□□□□ -2.17
UBX4YMR067C POP8P38208 133 aa1.48□□□□□ -2.17
UBX4YMR067C SPT8P38915 602 aa1.48□□□□□ -2.17
UBX4YMR067C YJL016WP47072 561 aa1.48□□□□□ -2.17
UBX4YMR067C SLM2P53955 656 aa1.48□□□□□ -2.17
UBX4YMR067C EBS1Q03466 884 aaKnown RBP1.48□□□□□ -2.17
UBX4YMR067C CAB5Q03941 241 aa1.48□□□□□ -2.17
UBX4YMR067C TOM40P23644 387 aaKnown RBP1.47□□□□□ -2.17
UBX4YMR067C PET18P25362 215 aa1.47□□□□□ -2.17
UBX4YMR067C COT1P32798 439 aa1.47□□□□□ -2.17
UBX4YMR067C SWC5P38326 303 aa1.47□□□□□ -2.17
UBX4YMR067C YHL026CP38740 315 aa1.47□□□□□ -2.17
UBX4YMR067C FET3P38993 636 aa1.47□□□□□ -2.17
UBX4YMR067C AVT7P40501 490 aa1.47□□□□□ -2.17
UBX4YMR067C LOH1P47055 219 aa1.47□□□□□ -2.17
UBX4YMR067C YHR086W-AQ3E746 53 aa1.47□□□□□ -2.17
UBX4YMR067C RPC37P36121 282 aa1.46□□□□□ -2.18
UBX4YMR067C DRE2P36152 348 aa1.46□□□□□ -2.18
UBX4YMR067C AIM20P40451 204 aa1.46□□□□□ -2.18
UBX4YMR067C CDC40P40968 455 aaPredicted RBP1.46□□□□□ -2.18
UBX4YMR067C YJL027CP47063 138 aaPredicted RBP1.46□□□□□ -2.18
UBX4YMR067C YPL077CQ02831 240 aa1.46□□□□□ -2.18
UBX4YMR067C DPP1Q05521 289 aa1.46□□□□□ -2.18
UBX4YMR067C TAZ1Q06510 381 aa1.46□□□□□ -2.18
UBX4YMR067C YOR114WQ12219 294 aa1.46□□□□□ -2.18
UBX4YMR067C PAA1Q12447 191 aaKnown RBP1.46□□□□□ -2.18
UBX4YMR067C YKL063CP35725 167 aa1.45□□□□□ -2.18
UBX4YMR067C YOR062CP36025 268 aa1.45□□□□□ -2.18
UBX4YMR067C SWD2P36104 329 aaPredicted RBP1.45□□□□□ -2.18
UBX4YMR067C SSO2P39926 295 aa1.45□□□□□ -2.18
UBX4YMR067C FCY21P40039 528 aa1.45□□□□□ -2.18
UBX4YMR067C YFR054CP43622 192 aa1.45□□□□□ -2.18
UBX4YMR067C CAB4P53332 305 aa1.45□□□□□ -2.18
UBX4YMR067C YMR209CQ03648 457 aa1.45□□□□□ -2.18
UBX4YMR067C ECM18Q04623 453 aa1.45□□□□□ -2.18
UBX4YMR067C YLR297WQ05899 129 aa1.45□□□□□ -2.18
UBX4YMR067C SIA1Q12212 622 aa1.45□□□□□ -2.18
UBX4YMR067C SMT3Q12306 101 aaKnown RBP1.45□□□□□ -2.18
UBX4YMR067C NOT5Q12514 560 aaPredicted RBP1.45□□□□□ -2.18
UBX4YMR067C FKS1P38631 1876 aaKnown RBP1.45□□□□□ -2.18
UBX4YMR067C SPT7P35177 1332 aa1.44□□□□□ -2.18
UBX4YMR067C ATP6P00854 259 aa1.44□□□□□ -2.18
UBX4YMR067C TFS1P14306 219 aa1.44□□□□□ -2.18
UBX4YMR067C ATG15P25641 520 aa1.44□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms