RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	ARP1	P38696	384 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	SOP4	P39543	234 aa	Predicted RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	FMC1	P40491	155 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	CFD1	P40558	293 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	STR3	P53101	465 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	GND2	P53319	492 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	YPL108W	Q02872	168 aa	Predicted RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	YDR248C	Q03786	193 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	TVP15	Q03860	143 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	YDL242W	Q07746	117 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	YOP1	Q12402	180 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	ADH2	P00331	348 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	CAR1	P00812	333 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	CAP2	P13517	287 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	PBN1	P25580	416 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	IMG1	P25626	169 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	RFA2	P26754	273 aa	Known RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	CNE1	P27825	502 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	SKG1	P36169	355 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	RIM2	P38127	377 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	ECM8	P38246	354 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	YBR285W	P38354	144 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
CDC48	YDL126C	UIP3	P39547	235 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	PTI1	P39927	425 aa	Predicted RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	FMP52	P40008	231 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	KRE29	P40026	464 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	SER2	P42941	309 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	BUD32	P53323	261 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	APM1	Q00776	475 aa	Predicted RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	PRM15	Q03262	622 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	SNT309	Q06091	175 aa	Predicted RBP	4.17	□□□□□ -1.74
CDC48	YDL126C	YPR127W	Q06494	345 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	COA6	Q3E846	104 aa		4.17	□□□□□ -1.74
CDC48	YDL126C	COX5A	P00424	153 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	HTB1	P02293	131 aa	Known RBP	4.16	□□□□□ -1.74
CDC48	YDL126C	HTB2	P02294	131 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	TPK3	P05986	398 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	RAD7	P06779	565 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	SEC12	P11655	471 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	LDS1	P31379	325 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	SPR1	P32603	445 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	RIB5	P38145	238 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	USE1	P53146	245 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	TIM13	P53299	105 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	RRN9	P53437	365 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	CDC14	Q00684	551 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	SKO1	Q02100	647 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YMR010W	Q03687	405 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	PLM2	Q04383	521 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YOL019W	Q08157	551 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	NCE102	Q12207	173 aa	RIP-Chip data	4.16	□□□□□ -1.74	not detected
CDC48	YDL126C	AGC1	Q12482	902 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YMR030W-A	Q3E760	96 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YBR085C-A	O43137	85 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	REP2	P03872	296 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
CDC48	YDL126C	IDP1	P21954	428 aa	Known RBP	4.16	□□□□□ -1.74
CDC48	YDL126C	PDE1	P22434	369 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	SPS19	P32573	292 aa	Known RBP	4.16	□□□□□ -1.74
CDC48	YDL126C	COS9	P36034	407 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	SRP102	P36057	244 aa	Predicted RBP	4.16	□□□□□ -1.74
CDC48	YDL126C	MRP21	P38175	177 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YKE4	P40544	346 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YGR201C	P42936	225 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	PMT4	P46971	762 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	DPB11	P47027	764 aa	Predicted RBP	4.16	□□□□□ -1.74
CDC48	YDL126C	SAE3	P89114	91 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	RSC9	Q03124	581 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	YMR253C	Q04835	414 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	LDB18	Q07887	179 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	SNF8	Q12483	233 aa		4.16	□□□□□ -1.74
CDC48	YDL126C	MET2	P08465	486 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	CBS2	P14905	389 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	SAC1	P32368	623 aa	Known RBP	4.15	□□□□□ -1.74
CDC48	YDL126C	RIB1	P38066	345 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	MBA1	P38300	278 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	BIG1	P38813	335 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	FET3	P38993	636 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	BTT1	P40314	149 aa	Predicted RBP	4.15	□□□□□ -1.74
CDC48	YDL126C	IDS2	P46958	469 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	HOC1	P47124	396 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	STE24	P47154	453 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	IBA57	P47158	497 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	YJR154W	P47181	346 aa		4.15	□□□□□ -1.74
CDC48	YDL126C	LYS20	P48570	428 aa	Known RBP	4.15	□□□□□ -1.74
CDC48	YDL126C	RPN13	O13563	156 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	COR1	P07256	457 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	PDA1	P16387	420 aa	Known RBP	4.15	□□□□□ -1.75
CDC48	YDL126C	URE2	P23202	354 aa	Known RBP	4.15	□□□□□ -1.75
CDC48	YDL126C	AAT2	P23542	418 aa	Known RBP	4.15	□□□□□ -1.75
CDC48	YDL126C	PUP3	P25451	205 aa	Known RBP	4.15	□□□□□ -1.75
CDC48	YDL126C	HYM1	P32464	399 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	BNA4	P38169	460 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	IKI1	P38874	309 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	PGD1	P40356	397 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	ASN2	P49090	572 aa	Known RBP	4.15	□□□□□ -1.75
CDC48	YDL126C	POP6	P53218	158 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	YGR079W	P53249	370 aa		4.15	□□□□□ -1.75
CDC48	YDL126C	NOP19	P53317	196 aa	Predicted RBP	4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms