RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	YOR029W	Q12243	111 aa		3.38	□□□□□ -1.87
TSR1	YDL060W	ATG34	Q12292	412 aa		3.38	□□□□□ -1.87
TSR1	YDL060W	COX2	P00410	251 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	RPS2	P25443	254 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	MXR2	P25566	168 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	SPT14	P32363	452 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	VMA6	P32366	345 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	SKN1	P33336	771 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	COS9	P36034	407 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	YKL071W	P36086	256 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	POP4	P38336	279 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	JLP2	P40206	208 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	LYS12	P40495	371 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	RPL10	P41805	221 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	TOS2	P50078	622 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	YGR168C	P53293	376 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	YDR222W	Q04925	415 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	YNG1	Q08465	219 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	CMC2	Q3E7A4	109 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	YCP4	P25349	247 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	SEC1	P30619	724 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	SKG6	P32900	734 aa	Predicted RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	NAT2	P37293	288 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	ECM8	P38246	354 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	SLX1	P38324	304 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	LAG1	P38703	411 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	VRG4	P40107	337 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	YAR1	P46683	200 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	CPR7	P47103	393 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	PCP1	P53259	346 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	CLD1	P53264	445 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	GPI15	P53961	229 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	HXT11	P54862	567 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	SPR6	Q01684	191 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	RRP17	Q04031	235 aa	Predicted RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	YMR226C	Q05016	267 aa	Known RBP	3.37	□□□□□ -1.87
TSR1	YDL060W	SUE1	Q06524	206 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	SHS1	Q07657	551 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	LDS2	Q08218	356 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	RGS2	Q99188	309 aa		3.37	□□□□□ -1.87
TSR1	YDL060W	TDH2	P00358	332 aa	Known RBP	3.36	□□□□□ -1.87
TSR1	YDL060W	TPK3	P05986	398 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	MATALPHA1	P0CY06	175 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	HMLALPHA1	P0CY07	175 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	LHP1	P33399	275 aa	Known RBP	3.36	□□□□□ -1.87
TSR1	YDL060W	NDT80	P38830	627 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	FAU1	P40099	211 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	BTT1	P40314	149 aa	Predicted RBP	3.36	□□□□□ -1.87
TSR1	YDL060W	YIL024C	P40543	189 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	YIR035C	P40579	254 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	AGP3	P43548	558 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	GET1	P53192	235 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	SCW4	P53334	386 aa	Known RBP	3.36	□□□□□ -1.87
TSR1	YDL060W	YNL033W	P53964	284 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	YNL019C	P53975	284 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	RHO4	Q00246	291 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	YMR030W-A	Q3E760	96 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	YHR213W-A	Q8TGT4	77 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	APA2	P22108	325 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	COQ3	P27680	312 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	SCO2	P38072	301 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	PHB2	P50085	310 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	GPI1	P53306	609 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	RMI1	Q02685	241 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	IZH1	Q03419	316 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	NHP10	Q03435	203 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	TVP15	Q03860	143 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	NAT4	Q04751	285 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	LAG2	Q92325	660 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	SAS5	Q99314	248 aa		3.36	□□□□□ -1.87
TSR1	YDL060W	ARF1	P11076	181 aa	Known RBP	3.35	□□□□□ -1.87
TSR1	YDL060W	HPR1	P17629	752 aa	Known RBP	3.35	□□□□□ -1.87
TSR1	YDL060W	CHA1	P25379	360 aa	Known RBP	3.35	□□□□□ -1.87
TSR1	YDL060W	YHR182W	P38870	785 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	FAA2	P39518	744 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	MMF1	P40185	145 aa	Known RBP	3.35	□□□□□ -1.87
TSR1	YDL060W	SOK1	P40317	901 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	CFD1	P40558	293 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	NSE4	P43124	402 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	3.35	□□□□□ -1.87	not detected
TSR1	YDL060W	MNN5	P46982	586 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	HMS2	P47175	358 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	NDE2	Q07500	545 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	YDL218W	Q07629	317 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	YGK3	Q12222	375 aa	Predicted RBP	3.35	□□□□□ -1.87
TSR1	YDL060W	HMS1	Q12398	434 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	YDL199C	Q12407	687 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	YPL119C-A	Q3E751	87 aa		3.35	□□□□□ -1.87
TSR1	YDL060W	ADH2	P00331	348 aa	Known RBP	3.34	□□□□□ -1.87
TSR1	YDL060W	BUB3	P26449	341 aa		3.34	□□□□□ -1.87
TSR1	YDL060W	SCM4	P32564	187 aa		3.34	□□□□□ -1.87
TSR1	YDL060W	MRPS5	P33759	307 aa		3.34	□□□□□ -1.87
TSR1	YDL060W	SER2	P42941	309 aa		3.34	□□□□□ -1.87
TSR1	YDL060W	YJR141W	P47172	347 aa	Predicted RBP	3.34	□□□□□ -1.87
TSR1	YDL060W	YPT32	P51996	222 aa	Known RBP	3.34	□□□□□ -1.87
TSR1	YDL060W	ARO8	P53090	500 aa	Known RBP	3.34	□□□□□ -1.87
TSR1	YDL060W	JAC1	P53193	184 aa		3.34	□□□□□ -1.87
TSR1	YDL060W	IMP4	P53941	290 aa	Known RBP	3.34	□□□□□ -1.87
TSR1	YDL060W	ARP10	Q04549	284 aa		3.34	□□□□□ -1.87
TSR1	YDL060W	YLR283W	Q05867	314 aa		3.34	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 82.2 ms