RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TTC19Q6DKK2 380 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ZC3H14Q6PJT7 736 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SFR1Q86XK3 245 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MYCT1Q8N699 235 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 MYCBPAPQ8TBZ2 947 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CCHCR1Q8TD31 782 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ADAMTS19Q8TE59 1207 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 KIFAP3Q92845 792 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 DNAJC19Q96DA6 116 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 STK33Q9BYT3 514 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 WDR11Q9BZH6 1224 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CARD9Q9H257 536 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GANQ9H2C0 597 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CPVLQ9H3G5 476 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 RABEP2Q9H5N1 569 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 VEZTQ9HBM0 779 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TUFT1Q9NNX1 390 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF277Q9NRM2 450 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CTTNBP2NLQ9P2B4 639 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SRP68Q9UHB9 627 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CYP3A7-CYP3A51PA0A087WV96 503 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 EPHB6O15197 1021 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 KRT14P02533 472 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SNHG28P0DPA3 235 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CYP3A7P24462 503 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 HNRNPH1P31943 449 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ARHGAP4P98171 946 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GUCY1A3Q02108 690 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PTK2Q05397 1052 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 KCNMA1Q12791 1236 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GRIK5Q16478 980 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ZC3H3Q8IXZ2 948 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SH2D3CQ8N5H7 860 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GBP7Q8N8V2 638 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SYT2Q8N9I0 419 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ATL2Q8NHH9 583 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 GRK7Q8WTQ7 553 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 SCFD1Q8WVM8 642 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CYFIP2Q96F07 1278 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 FAM81BQ96LP2 452 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ASB2Q96Q27 587 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 POLR3CQ9BUI4 534 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 VCPKMTQ9H867 229 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 PARVGQ9HBI0 331 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 TTC7AQ9ULT0 858 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 NOVA2Q9UNW9 492 aaKnown RBP4.29□□□□□ -1.72
SCN1A-214ENST00000637038 EXOC7Q9UPT5 735 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 CEP83Q9Y592 693 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ANK1P16157 1881 aa4.29□□□□□ -1.72
SCN1A-214ENST00000637038 ARHGEF35A5YM69 484 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ANKRD62A6NC57 917 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 TMEM8BA6NDV4 472 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CFAP73A6NFT4 308 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF233A6NK53 670 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 EXOC3O60645 756 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 AGTP01019 485 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 FGGP02679 453 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GHRP10912 638 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ERCC3P19447 782 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 OSBPP22059 807 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GPSM2P81274 684 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ACTN3Q08043 901 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 DDR1Q08345 913 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 BMT2Q1RMZ1 405 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 Q4G0T1 1027 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PTF1AQ7RTS3 328 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 FAM178BQ8IXR5 827 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PRPF38AQ8NAV1 312 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 BBOF1Q8ND07 529 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SCFD2Q8WU76 684 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CENPTQ96BT3 561 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CHMP6Q96FZ7 201 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 WNK4Q96J92 1243 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 NACC1Q96RE7 527 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 HINFPQ9BQA5 517 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 EHD4Q9H223 541 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SPC25Q9HBM1 224 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SMARCAL1Q9NZC9 954 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 NYAP2Q9P242 653 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 DAGLAQ9Y4D2 1042 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 KLRG2A4D1S0 409 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CARNS1A5YM72 827 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PRR5-ARHGAP8B1AHC4 643 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 USP17L10C9JJH3 530 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 P4HA2O15460 535 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CCL5P13501 91 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 AKR1B1P15121 316 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PON1P27169 355 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 COPB2P35606 906 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GTF2IP78347 998 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ARHGAP8P85298 464 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ACAP1Q15027 740 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PPP1R7Q15435 360 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 NFIL3Q16649 462 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 QRICH1Q2TAL8 776 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PPP1R2P3Q6NXS1 205 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GPIHBP1Q8IV16 184 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 RSRC1Q96IZ7 334 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 AP1M1Q9BXS5 423 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms