RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SHCBP1Q8NEM2 672 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 MLPHQ9BV36 600 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 TRPM5Q9NZQ8 1165 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 APPL1Q9UKG1 709 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 CC2D2AQ9P2K1 1620 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 KCNJ18B7U540 433 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 AP3D1O14617 1153 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 CLUP10909 449 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 CYLC2Q14093 348 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 KCNJ12Q14500 433 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 EDRF1Q3B7T1 1238 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 TBC1D25Q3MII6 688 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 C4orf46Q504U0 113 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 ARSJQ5FYB0 599 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 KANK4Q5T7N3 995 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 C1orf146Q5VVC0 180 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 FRMD8Q9BZ67 464 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 RGS20O76081 388 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 NPEPPSP55786 919 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 TMPRSS15P98073 1019 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 NFIAQ12857 509 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 OLFML2AQ68BL7 652 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 KCTD17Q8N5Z5 321 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 GAL3ST3Q96A11 431 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 CCDC127Q96BQ5 260 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 PBKQ96KB5 322 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 TMEM106CQ9BVX2 250 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 IPPQ9Y573 584 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 MYH13Q9UKX3 1938 aa6.35□□□□□ -1.39
SCN1A-212ENST00000636194 KDM5AP29375 1690 aaKnown RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 ZC3H4Q9UPT8 1303 aaKnown RBP6.35□□□□□ -1.39
SCN1A-212ENST00000636194 ASB14A6NK59 587 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SERPINB3P29508 390 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 ALDH1A3P47895 512 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RGS4P49798 205 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 STX4Q12846 297 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 ZCCHC8Q6NZY4 707 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 KRT28Q7Z3Y7 464 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 DDIASQ8IXT1 998 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 PANX2Q96RD6 677 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 LRRC2Q9BYS8 371 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TRIM36Q9NQ86 728 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 AKNAQ7Z591 1439 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 COPEO14579 308 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RNASEH1O60930 286 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 ZNF202O95125 648 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RRM2P31350 389 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 FAM9CQ8IZT9 166 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 STKLD1Q8NE28 680 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 FAM161BQ96MY7 647 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 NLNQ9BYT8 704 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SYNGAP1Q96PV0 1343 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SBNO2Q9Y2G9 1366 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TRIM64BA6NI03 449 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 AFPP02771 609 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TRIM27P14373 513 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 KCNA2P16389 499 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SERPINH1P50454 418 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 PSME3P61289 254 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 FASTKD1Q53R41 847 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RASGEF1AQ8N9B8 481 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 HAVCR1Q96D42 359 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 PHACTR3Q96KR7 559 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 HEXIM2Q96MH2 286 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 THTPAQ9BU02 230 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 STAP1Q9ULZ2 295 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 MGAT4AQ9UM21 535 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 DOCK10Q96BY6 2186 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 BLMP54132 1417 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 CTNND1O60716 968 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TSC22D2O75157 780 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SNRNP200O75643 2136 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 H2AFZP0C0S5 128 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 HNRNPH2P55795 449 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RWDD2BP57060 319 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 PLIN5Q00G26 463 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TCP10Q12799 353 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 IFT88Q13099 833 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TCP11X2Q5H9J9 407 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RC3H1Q5TC82 1133 aaKnown RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 H2AFVQ71UI9 128 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 CABP7Q86V35 215 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SYT2Q8N9I0 419 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 ACSBG1Q96GR2 724 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 ENOPH1Q9UHY7 261 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 RPS6KA6Q9UK32 745 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 TTC7AQ9ULT0 858 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 B2RBV5 119 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SNPHO15079 494 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 CAND2O75155 1236 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SMNDC1O75940 238 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 CALB1P05937 261 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 HIST2H2ACQ16777 129 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-212ENST00000636194 ANO4Q32M45 955 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 HIST2H2AA3Q6FI13 130 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 MB21D1Q8N884 522 aa6.34□□□□□ -1.39
SCN1A-212ENST00000636194 SLC9A6Q92581 669 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms