RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 STRN3Q13033 797 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 EPC2Q52LR7 807 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 PPP4R3CPQ6ZMV5 832 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 FAM178BQ8IXR5 827 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 CCDC51Q96ER9 411 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 CCDC113Q9H0I3 377 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 GOLPH3LQ9H4A5 285 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 KBTBD4Q9NVX7 518 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 ARHGAP28Q9P2N2 729 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 SERTAD1Q9UHV2 236 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 HPSEQ9Y251 543 aa19.9■□□□□ 0.78
CLN3-239ENST00000628023 C9IYK1 514 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 TRAK2O60296 914 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 SKIP12755 728 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 GAP43P17677 238 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 ARF4P18085 180 aaPredicted RBP19.89■□□□□ 0.77
CLN3-239ENST00000628023 AFMP43652 599 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 RAB27AP51159 221 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 ASIC1P78348 528 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 AMHR2Q16671 573 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 FAM187BQ17R55 369 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 SFR1Q86XK3 245 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 CCDC65Q8IXS2 484 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 TMEM192Q8IY95 271 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 MRPL38Q96DV4 380 aaKnown RBP19.89■□□□□ 0.77
CLN3-239ENST00000628023 C1QTNF1Q9BXJ1 281 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 TRIM6Q9C030 488 aaPredicted RBP19.89■□□□□ 0.77
CLN3-239ENST00000628023 FZD8Q9H461 694 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 FAM105AQ9NUU6 356 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 CNTNAP2Q9UHC6 1331 aa19.89■□□□□ 0.77
CLN3-239ENST00000628023 TTC3P53804 2025 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 MUC3AQ02505 3323 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 FAM237AA0A1B0GTK4 181 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 ACKR2O00590 384 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 N4BP3O15049 544 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 ACTN4O43707 911 aaKnown RBP19.88■□□□□ 0.77
CLN3-239ENST00000628023 SLFN14P0C7P3 912 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 COL9A1P20849 921 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 HOXA11P31270 313 aaPredicted RBP19.88■□□□□ 0.77
CLN3-239ENST00000628023 GPM6BQ13491 265 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 ECHDC2Q86YB7 292 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 FIBCD1Q8N539 461 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 DNAJC19Q96DA6 116 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 CCDC34Q96HJ3 373 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 MRPL4Q9BYD3 311 aaKnown RBP19.88■□□□□ 0.77
CLN3-239ENST00000628023 TRIM9Q9C026 710 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 TMEM134Q9H6X4 195 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 UBE2ZQ9H832 354 aaPredicted RBP19.88■□□□□ 0.77
CLN3-239ENST00000628023 PANK4Q9NVE7 773 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 TMEM161AQ9NX61 479 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 SEL1LQ9UBV2 794 aa19.88■□□□□ 0.77
CLN3-239ENST00000628023 A0A0U1RQF3 1178 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 H3BNC9 293 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 NCKAP1LP55160 1127 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 TIGD5Q53EQ6 642 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 HERC4Q5GLZ8 1057 aaPredicted RBP19.87■□□□□ 0.77
CLN3-239ENST00000628023 HAUS6Q7Z4H7 955 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 TMEM161BQ8NDZ6 487 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 CNNM3Q8NE01 707 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 BICD1Q96G01 975 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 ADPGKQ9BRR6 497 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 NTPCRQ9BSD7 190 aaKnown RBP19.87■□□□□ 0.77
CLN3-239ENST00000628023 BLZF1Q9H2G9 400 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 ELAC1Q9H777 363 aaKnown RBP19.87■□□□□ 0.77
CLN3-239ENST00000628023 MRPL44Q9H9J2 332 aaKnown RBP19.87■□□□□ 0.77
CLN3-239ENST00000628023 RWDD3Q9Y3V2 267 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 PCDHB2Q9Y5E7 798 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 BRWD1Q9NSI6 2320 aa19.87■□□□□ 0.77
CLN3-239ENST00000628023 HOXA2O43364 376 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 ZNF202O95125 648 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 MAPTP10636 758 aaKnown RBP19.86■□□□□ 0.77
CLN3-239ENST00000628023 SCP2P22307 547 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 FAM189BP81408 668 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 LONRF3Q496Y0 759 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 ATF7IP2Q5U623 682 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 SLC27A1Q6PCB7 646 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 CDR2LQ86X02 465 aaPredicted RBP19.86■□□□□ 0.77
CLN3-239ENST00000628023 GRAMD1CQ8IYS0 662 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 HACE1Q8IYU2 909 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 ABI1Q8IZP0 508 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 PGBD4Q96DM1 585 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 PAGE5Q96GU1 130 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 C7orf25Q9BPX7 421 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 TRAIPQ9BWF2 469 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 TBC1D7Q9P0N9 293 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 USP20Q9Y2K6 914 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 XIRP2A4UGR9 3374 aa19.86■□□□□ 0.77
CLN3-239ENST00000628023 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.85■□□□□ 0.77
CLN3-239ENST00000628023 A0A1B0GUA9 196 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 NPTXRO95502 500 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 RB1P06400 928 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 FGFR1P11362 822 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 NMT1P30419 496 aaKnown RBP19.85■□□□□ 0.77
CLN3-239ENST00000628023 ABCD1P33897 745 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 COASYQ13057 564 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 BTG3Q14201 252 aaPredicted RBP19.85■□□□□ 0.77
CLN3-239ENST00000628023 PAN2Q504Q3 1202 aaKnown RBP19.85■□□□□ 0.77
CLN3-239ENST00000628023 TAS1R3Q7RTX0 852 aa19.85■□□□□ 0.77
CLN3-239ENST00000628023 APBB1IPQ7Z5R6 666 aaPredicted RBP19.85■□□□□ 0.77
CLN3-239ENST00000628023 TMEM87AQ8NBN3 555 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms