RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SPATA20Q8TB22 786 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 RAD9AQ99638 391 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 ACO2Q99798 780 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 BLZF1Q9H2G9 400 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 FAM105AQ9NUU6 356 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 LRFN2Q9ULH4 789 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 INSL6Q9Y581 213 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 PCDHB7Q9Y5E2 793 aa18.18■□□□□ 0.5
SHKBP1-219ENST00000599575 KLRC4O43908 158 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 RHOBTB3O94955 611 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 GCNT3O95395 438 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 MBD3O95983 291 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 NMT1P30419 496 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 SNRPFP62306 86 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 RAB30Q15771 203 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 KYAT1Q16773 422 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 L1TD1Q5T7N2 865 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 TAS1R3Q7RTX0 852 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 ECHDC2Q86YB7 292 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 GRAMD1CQ8IYS0 662 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 ACCSQ96QU6 501 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 TRIM6Q9C030 488 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 PCDH10Q9P2E7 1040 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 PCDHB2Q9Y5E7 798 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 PCDHA11Q9Y5I1 949 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 TET1Q8NFU7 2136 aa18.17■□□□□ 0.5
SHKBP1-219ENST00000599575 HNRNPDLO14979 420 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 B4GALT5O43286 388 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 PROZP22891 400 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 DEFB103AP81534 67 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 HTRA4P83105 476 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 HSP90AA2PQ14568 343 aaPredicted RBP18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 UBXN11Q5T124 520 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 NT5DC1Q5TFE4 455 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 SLFN12LQ6IEE8 588 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 ZNF598Q86UK7 904 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 ZBED2Q9BTP6 218 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 PDZD7Q9H5P4 517 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 PTPRHQ9HD43 1115 aa18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 CGNQ9P2M7 1197 aaKnown RBP18.16■□□□□ 0.5
SHKBP1-219ENST00000599575 CARNS1A5YM72 827 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 CLDN3O15551 220 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 MCF2P10911 925 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 LIG4P49917 911 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 BMT2Q1RMZ1 405 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 KMT5BQ4FZB7 885 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 MPZL3Q6UWV2 235 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 EPM2AIP1Q7L775 607 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 ZNF507Q8TCN5 953 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 BICD1Q96G01 975 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 CPB2Q96IY4 423 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 TARS2Q9BW92 718 aaKnown RBP18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 MSRAQ9UJ68 235 aa18.15■□□□□ 0.5
SHKBP1-219ENST00000599575 KIAA0391O15091 583 aaKnown RBP18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 TLL1O43897 1013 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 DGKIO75912 1065 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 CASP1P29466 404 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 POU5F1Q01860 360 aaKnown RBP18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 MCL1Q07820 350 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 ZC2HC1CQ53FD0 456 aaPredicted RBP18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 SMARCE1Q969G3 411 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 TCHPQ9BT92 498 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 STYXL1Q9Y6J8 313 aa18.14■□□□□ 0.49
SHKBP1-219ENST00000599575 COL4A6Q14031 1691 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 TMEM265A0A087WTH1 108 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 MCM4P33991 863 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 PPP1R2P41236 205 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 PNOCQ13519 176 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 ZNF568Q3ZCX4 644 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 COBLL1Q53SF7 1204 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 GPR153Q6NV75 609 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 GLB1LQ6UWU2 654 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 CMTR2Q8IYT2 770 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 ABI1Q8IZP0 508 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 SYCP3Q8IZU3 236 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 GOLGA5Q8TBA6 731 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 SP7Q8TDD2 431 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 ZNF689Q96CS4 500 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 YME1L1Q96TA2 773 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 MRPL9Q9BYD2 267 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 TMEM117Q9H0C3 514 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 RC3H2Q9HBD1 1191 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 TBC1D7Q9P0N9 293 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 KANSL3Q9P2N6 904 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 GIT1Q9Y2X7 761 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 IPPQ9Y573 584 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 PCDHA5Q9Y5H7 936 aa18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-219ENST00000599575 MICAL3Q7RTP6 2002 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 TTLL13PA6NNM8 815 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 INPPL1O15357 1258 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 UPP2O95045 317 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 NPTXRO95502 500 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 EDN1P05305 212 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 PRR29P0C7W0 189 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 MYBP10242 640 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 ITGA4P13612 1032 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 ATF7P17544 494 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 CASP5P51878 434 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms