RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	INSL6	Q9Y581	213 aa		13.37	□□□□□ -0.27
SF3B3-208	ENST00000567250	PCDHA11	Q9Y5I1	949 aa		13.37	□□□□□ -0.27
SF3B3-208	ENST00000567250	UBE4B	O95155	1302 aa		13.37	□□□□□ -0.27
SF3B3-208	ENST00000567250	ZMYM2	Q9UBW7	1377 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	CIT	O14578	2027 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	TMEM265	A0A087WTH1	108 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	HNRNPDL	O14979	420 aa	Known RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	ZNF623	O75123	536 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	PRPF40A	O75400	957 aa	Known RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	IBSP	P21815	317 aa	Predicted RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	DNAJB2	P25686	324 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	HOXA11	P31270	313 aa	Predicted RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	LIG4	P49917	911 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	GTF2B	Q00403	316 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	CUL4B	Q13620	913 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	ZNF568	Q3ZCX4	644 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	HABP4	Q5JVS0	413 aa	Known RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	FAM26F	Q5R3K3	315 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	ZPBP2	Q6X784	338 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	MAP4K3	Q8IVH8	894 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	ENGASE	Q8NFI3	743 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	FIZ1	Q96SL8	496 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	RAD9A	Q99638	391 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	PBX4	Q9BYU1	374 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	PDZD7	Q9H5P4	517 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	TBX20	Q9UMR3	447 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	TNFSF13B	Q9Y275	285 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	PCDHB13	Q9Y5F0	798 aa		13.36	□□□□□ -0.27
SF3B3-208	ENST00000567250	EIF3D	O15371	548 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	GADD45B	O75293	160 aa	Predicted RBP	13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	NR1I2	O75469	434 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	TOM1L1	O75674	476 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	NMT1	P30419	496 aa	Known RBP	13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	FAM189B	P81408	668 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	HTRA4	P83105	476 aa	Predicted RBP	13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	SNW1	Q13573	536 aa	Known RBP	13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	FAM117B	Q6P1L5	589 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	TAS1R3	Q7RTX0	852 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	ZNF720	Q7Z2F6	126 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	GRAMD1C	Q8IYS0	662 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	RNF169	Q8NCN4	708 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	TCHP	Q9BT92	498 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	MRPL9	Q9BYD2	267 aa	Known RBP	13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	TMEM206	Q9H813	350 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	UBN1	Q9NPG3	1134 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	RMND1	Q9NWS8	449 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	PCDHB2	Q9Y5E7	798 aa		13.35	□□□□□ -0.27
SF3B3-208	ENST00000567250	PDCD11	Q14690	1871 aa	Known RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	PPP1R37	O75864	691 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	DGKI	O75912	1065 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	KIF20A	O95235	890 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	SMC2	O95347	1197 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	NPTXR	O95502	500 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	PIGR	P01833	764 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	ITGA4	P13612	1032 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	MATR3	P43243	847 aa	Known RBP eCLIP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	PSMD2	Q13200	908 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	L1TD1	Q5T7N2	865 aa	Known RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	PPP2R2D	Q66LE6	453 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	GLB1L	Q6UWU2	654 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	MPZL3	Q6UWV2	235 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	CMTR2	Q8IYT2	770 aa	Known RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	LRRC43	Q8N309	656 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	ACCS	Q96QU6	501 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	ACO2	Q99798	780 aa	Known RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	TARS2	Q9BW92	718 aa	Known RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	GTPBP4	Q9BZE4	634 aa	Known RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	TMEM117	Q9H0C3	514 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	RSAD1	Q9HA92	442 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	SLC28A3	Q9HAS3	691 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	TBC1D7	Q9P0N9	293 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	ANKFY1	Q9P2R3	1169 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	RWDD3	Q9Y3V2	267 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	IPP	Q9Y573	584 aa		13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	COL4A4	P53420	1690 aa	Predicted RBP	13.34	□□□□□ -0.27
SF3B3-208	ENST00000567250	LAMA3	Q16787	3333 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	CARNS1	A5YM72	827 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	GRXCR1	A8MXD5	290 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	CLDN3	O15551	220 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	RPN1	P04843	607 aa	Known RBP	13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	EDN1	P05305	212 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	CA3	P07451	260 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	MCF2	P10911	925 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	ATF7	P17544	494 aa	Predicted RBP	13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	CASP1	P29466	404 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	RABGGTB	P53611	331 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	EHHADH	Q08426	723 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	DPYD	Q12882	1025 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	BTG3	Q14201	252 aa	Predicted RBP	13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	KCNB1	Q14721	858 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	KYAT1	Q16773	422 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	UBXN11	Q5T124	520 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	ZNF697	Q5TEC3	545 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	NT5DC1	Q5TFE4	455 aa		13.33	□□□□□ -0.28
SF3B3-208	ENST00000567250	SLFN12L	Q6IEE8	588 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms