RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ATRIPQ8WXE1 791 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 RSPH1Q8WYR4 309 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 GJA10Q969M2 543 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 LENG9Q96B70 501 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 PCYT2Q99447 389 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 SDF4Q9BRK5 362 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 EMILIN2Q9BXX0 1053 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 CDHR5Q9HBB8 845 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 ARHGEF3Q9NR81 526 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 DLGAP2Q9P1A6 1054 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 STK39Q9UEW8 545 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 CEP131Q9UPN4 1083 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 PCDHGA2Q9Y5H1 932 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 COL1A2P08123 1366 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 DCDC2BA2VCK2 349 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 MSH4O15457 936 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 HBP1O60381 514 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 OR52Z1P0C646 297 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 BCAR1P56945 870 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 DMWDQ09019 674 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 ORC2Q13416 577 aaPredicted RBP12.62□□□□□ -0.39
CLN3-226ENST00000567160 DSC3Q14574 896 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 PTPAQ15257 358 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 KIZQ2M2Z5 673 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 ATL3Q6DD88 541 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 ECHDC2Q86YB7 292 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 KIAA0319LQ8IZA0 1049 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 SLC44A3Q8N4M1 653 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 RNF169Q8NCN4 708 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 PJA1Q8NG27 643 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 SHDQ96IW2 340 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 OSMRQ99650 979 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 ZNF577Q9BSK1 485 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 GDPD2Q9HCC8 539 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 AGO4Q9HCK5 861 aaKnown RBP12.62□□□□□ -0.39
CLN3-226ENST00000567160 KCNH7Q9NS40 1196 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 RNF19AQ9NV58 838 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 FBXO4Q9UKT5 387 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 CFAP45Q9UL16 551 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 USP18Q9UMW8 372 aa12.62□□□□□ -0.39
CLN3-226ENST00000567160 NT5C1B-RDH14C9J2C7 533 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 DDX39AO00148 427 aaKnown RBP12.61□□□□□ -0.39
CLN3-226ENST00000567160 LAMTOR5O43504 91 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 BAG4O95429 457 aaKnown RBP12.61□□□□□ -0.39
CLN3-226ENST00000567160 BMP15O95972 392 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 MARCKSP29966 332 aaPredicted RBP12.61□□□□□ -0.39
CLN3-226ENST00000567160 TXKP42681 527 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 NASPP49321 788 aaPredicted RBP12.61□□□□□ -0.39
CLN3-226ENST00000567160 ACTR2P61160 394 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 ATP2C1P98194 919 aaPredicted RBP12.61□□□□□ -0.39
CLN3-226ENST00000567160 PTPN14Q15678 1187 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 DCLRE1AQ6PJP8 1040 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 CYP26C1Q6V0L0 522 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 DDX53Q86TM3 631 aaKnown RBP12.61□□□□□ -0.39
CLN3-226ENST00000567160 C4orf32Q8N8J7 132 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 ETNPPLQ8TBG4 499 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 GPR152Q8TDT2 470 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 AUTS2Q8WXX7 1259 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 SPATA32Q96LK8 384 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 BCO2Q9BYV7 579 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 EPS15L1Q9UBC2 864 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 DPP7Q9UHL4 492 aa12.61□□□□□ -0.39
CLN3-226ENST00000567160 IPO5O00410 1097 aaKnown RBP12.6□□□□□ -0.39
CLN3-226ENST00000567160 ZC3H11AO75152 810 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLN3-226ENST00000567160 YEATS4O95619 227 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 KLRC2P26717 231 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 ITGB3BPQ13352 177 aaPredicted RBP12.6□□□□□ -0.39
CLN3-226ENST00000567160 COL9A2Q14055 689 aaPredicted RBP12.6□□□□□ -0.39
CLN3-226ENST00000567160 SLC39A14Q15043 492 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 ZNF484Q5JVG2 852 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 CLLU1OSQ5K130 101 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 LRCH2Q5VUJ6 765 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 FAM160B1Q5W0V3 765 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 ZNF710Q8N1W2 664 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 LINC00301Q8NCQ3 95 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 HELQQ8TDG4 1101 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 LEO1Q8WVC0 666 aaPredicted RBP12.6□□□□□ -0.39
CLN3-226ENST00000567160 RSAD2Q8WXG1 361 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 HAS1Q92839 578 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 SLC5A5Q92911 643 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 FAM20AQ96MK3 541 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 MTMR9Q96QG7 549 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 PPP1R16BQ96T49 567 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 KCNMB3Q9NPA1 279 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 SPATA6Q9NWH7 488 aaPredicted RBP12.6□□□□□ -0.39
CLN3-226ENST00000567160 GMEB2Q9UKD1 530 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 SMG5Q9UPR3 1016 aaKnown RBP12.6□□□□□ -0.39
CLN3-226ENST00000567160 NFASCO94856 1347 aa12.6□□□□□ -0.39
CLN3-226ENST00000567160 DOCK8Q8NF50 2099 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 LAD1O00515 517 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 TBX3O15119 743 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 SPTLC2O15270 562 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 GAS7O60861 476 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 CLCN4P51793 760 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 PPM1JQ5JR12 505 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 SLFN12Q8IYM2 578 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 CMASQ8NFW8 434 aaPredicted RBP12.59□□□□□ -0.39
CLN3-226ENST00000567160 IGSF21Q96ID5 467 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 TEKT3Q9BXF9 490 aa12.59□□□□□ -0.39
CLN3-226ENST00000567160 RHOBTB2Q9BYZ6 727 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms