RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 DHX32Q7L7V1 743 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 MIER3Q7Z3K6 550 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 MRPL10Q7Z7H8 261 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 C1orf210Q8IVY1 113 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 COLGALT2Q8IYK4 626 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 RASEFQ8IZ41 740 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 SUMF1Q8NBK3 374 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 PJA1Q8NG27 643 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 RUBCNQ92622 972 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 STAMQ92783 540 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 PGBD4Q96DM1 585 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 B3GALT6Q96L58 329 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 CNTNAP3BQ96NU0 1288 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 CNTNAP3Q9BZ76 1288 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 MINDY3Q9H8M7 445 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 STK39Q9UEW8 545 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 NAP1L2Q9ULW6 460 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 SIT1Q9Y3P8 196 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 ANHXE9PGG2 379 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 MAFO75444 373 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 TDP2O95551 362 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 ALDH2P05091 517 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 LAMP2P13473 410 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 CPA1P15085 419 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 GNA11P29992 359 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 HOXA11P31270 313 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 DNM2P50570 870 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 CDC42EP1Q00587 391 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 DSC1Q08554 894 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 RSPO4Q2I0M5 234 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 KIAA0319Q5VV43 1072 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 DCLRE1AQ6PJP8 1040 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 CYP26C1Q6V0L0 522 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 GLYCTKQ8IVS8 523 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 SMG8Q8ND04 991 aaKnown RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 RDM1Q8NG50 284 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 CCDC12Q8WUD4 166 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 PHKBQ93100 1093 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 FAM193BQ96PV7 902 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 RPP25Q9BUL9 199 aaKnown RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 INO80BQ9C086 356 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 RXFP1Q9HBX9 757 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 SLC2A4RGQ9NR83 387 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 VPS54Q9P1Q0 977 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 NUMBLQ9Y6R0 609 aa9.16□□□□□ -0.94
CCDC88C-214ENST00000557507 FAM208BQ5VWN6 2430 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 DDX11L8A8MPP1 907 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 PRPF3O43395 683 aaKnown RBP9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 TGM5O43548 720 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 KINO60870 393 aaKnown RBP9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 NCLP19338 710 aaKnown RBP9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 MLH1P40692 756 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 OR1G1P47890 313 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 NPEPPSP55786 919 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 DSG1Q02413 1049 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 RNF20Q5VTR2 975 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 PALB2Q86YC2 1186 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 ZNF579Q8NAF0 562 aaKnown RBP9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 ETNPPLQ8TBG4 499 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 FGF14Q92915 247 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 NXPE3Q969Y0 559 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 ZFP42Q96MM3 310 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 GAD1Q99259 594 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 EIF2AQ9BY44 585 aaKnown RBP9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 NT5C3AQ9H0P0 336 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 PIDD1Q9HB75 910 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 BMP2KQ9NSY1 1161 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 MIOSQ9NXC5 875 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 HES2Q9Y543 173 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 COL4A3BPQ9Y5P4 624 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 ATG2BQ96BY7 2078 aa9.15□□□□□ -0.94
CCDC88C-214ENST00000557507 EML5Q05BV3 1969 aa9.15□□□□□ -0.95
CCDC88C-214ENST00000557507 CFAP47Q6ZTR5 3102 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 EML1O00423 815 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 SRGAP2CP0DJJ0 459 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 RPL17P18621 184 aaKnown RBP9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 SCNN1GP51170 649 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 USP11P51784 963 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 STARD6P59095 220 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 GPC5P78333 572 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 NTRK3Q16288 839 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 TSGA10IPQ3SY00 556 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 Q4G0T1 1027 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 ELMSAN1Q6PJG2 1045 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 PARM1Q6UWI2 310 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 CCDC148Q8NFR7 591 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 BICD2Q8TD16 824 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 TBCKQ8TEA7 893 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 TMEM143Q96AN5 459 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 GPR62Q9BZJ7 368 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 PRKD2Q9BZL6 878 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 CHST7Q9NS84 486 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 ZDHHC7Q9NXF8 308 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 KANSL3Q9P2N6 904 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 WRAP73Q9P2S5 460 aaPredicted RBP9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 CACNG4Q9UBN1 327 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 SSX2IPQ9Y2D8 614 aa9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 MTF2Q9Y483 593 aaPredicted RBP9.14□□□□□ -0.95
CCDC88C-214ENST00000557507 IPPQ9Y573 584 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms