RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 GTF2BQ00403 316 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 STRN3Q13033 797 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 RAB30Q15771 203 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 ZC2HC1CQ53FD0 456 aaPredicted RBP16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 ATF7IP2Q5U623 682 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 RNF169Q8NCN4 708 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 TARS2Q9BW92 718 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 ST6GALNAC4Q9H4F1 302 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 MRPL44Q9H9J2 332 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 RNF19AQ9NV58 838 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 TBX20Q9UMR3 447 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 PCDHB7Q9Y5E2 793 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 PCDHB2Q9Y5E7 798 aa16.32■□□□□ 0.2
VIPAS39-210ENST00000557466 COL4A4P53420 1690 aaPredicted RBP16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 MEIS3P2A8K0S8 358 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 KLRC4O43908 158 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 DGKIO75912 1065 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 ARHGEF15O94989 841 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 GCNT3O95395 438 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 MYL1P05976 194 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 MYBP10242 640 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 FGFR1P11362 822 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 SCP2P22307 547 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 EHHADHQ08426 723 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 FAM26FQ5R3K3 315 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 SLC27A1Q6PCB7 646 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 ZNF720Q7Z2F6 126 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 MAP4K3Q8IVH8 894 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 SMG8Q8ND04 991 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 SLC17A8Q8NDX2 589 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 GLIS3Q8NEA6 775 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 LPPQ93052 612 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 YME1L1Q96TA2 773 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 RAD9AQ99638 391 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 ACO2Q99798 780 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 STRA6Q9BX79 667 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 NKX2-4Q9H2Z4 354 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 TNFSF13BQ9Y275 285 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 IPPQ9Y573 584 aa16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 TDRD15B5MCY1 1934 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-210ENST00000557466 RANBP2P49792 3224 aaKnown RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 PVALEFA0A1B0GWK0 134 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 ABLIM1O14639 778 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 ZNF623O75123 536 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 SLC34A2O95436 690 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 CA3P07451 260 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 SKIP12755 728 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 DPYDQ12882 1025 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 POSTNQ15063 836 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 ZNF568Q3ZCX4 644 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 CLLU1OSQ5K130 101 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 MRPL10Q7Z7H8 261 aaKnown RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 SP7Q8TDD2 431 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 ZNF689Q96CS4 500 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 HVCN1Q96D96 273 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 TIGD1Q96MW7 591 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 TRIM6Q9C030 488 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 CDT1Q9H211 546 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 NXF3Q9H4D5 531 aaKnown RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 RNF216Q9NWF9 866 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 MSRAQ9UJ68 235 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 HES2Q9Y543 173 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 INSL6Q9Y581 213 aa16.3■□□□□ 0.2
VIPAS39-210ENST00000557466 CITO14578 2027 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 PDCD11Q14690 1871 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 KINO60870 393 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 EOMESO95936 686 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 PIGRP01833 764 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 RPN1P04843 607 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 PROZP22891 400 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 ABCD1P33897 745 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 FXR1P51114 621 aaKnown RBP eCLIP16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 KCNA1Q09470 495 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 PNOCQ13519 176 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 DCAF4L1Q3SXM0 396 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 KMT5BQ4FZB7 885 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 PAN2Q504Q3 1202 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 KANK3Q6NY19 840 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 ZPBP2Q6X784 338 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 AGMOQ6ZNB7 445 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 TIFAQ96CG3 184 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 BICD1Q96G01 975 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 ZBTB45Q96K62 511 aaPredicted RBP16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 ADPGKQ9BRR6 497 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 APOL6Q9BWW8 343 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 IKZF4Q9H2S9 585 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 PTPRHQ9HD43 1115 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 LMBRD1Q9NUN5 540 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 EXOC1Q9NV70 894 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 ANKFY1Q9P2R3 1169 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 TRIP11Q15643 1979 aa16.29■□□□□ 0.2
VIPAS39-210ENST00000557466 HNRNPDLO14979 420 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 HOXA2O43364 376 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 PRPF6O94906 941 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 LIG4P49917 911 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 ALCAMQ13740 583 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 L1TD1Q5T7N2 865 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 SLC39A4Q6P5W5 647 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 MPZL3Q6UWV2 235 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 SPRED2Q7Z698 418 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms