RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RRP1BQ14684 758 aaKnown RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 FMNL3Q8IVF7 1028 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 NSRP1Q9H0G5 558 aaKnown RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 EPN3Q9H201 632 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 TMX2Q9Y320 296 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 WDR91A4D1P6 747 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 CSDE1O75534 798 aaKnown RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 ATF2P15336 505 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 PSMC5P62195 406 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 CXCL9Q07325 125 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 NEDD9Q14511 834 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 KRT39Q6A163 491 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 PALB2Q86YC2 1186 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 ARHGEF19Q8IW93 802 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 ZSWIM2Q8NEG5 633 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 TCP11Q8WWU5 503 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 N4BP2L2Q92802 583 aaPredicted RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 P2RX7Q99572 595 aaKnown RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 TACO1Q9BSH4 297 aaKnown RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 ADAM22Q9P0K1 906 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 MYO3BQ8WXR4 1341 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 PASKQ96RG2 1323 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 LRRD1A4D1F6 860 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 CCDC188H7C350 402 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 TMEM191BP0C7N4 346 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 STX2P32856 288 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 BAG6P46379 1132 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 RWDD2BP57060 319 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 TAS1R2Q8TE23 839 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 GMCL1Q96IK5 515 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 RSRC1Q96IZ7 334 aaKnown RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 POLR3FQ9H1D9 316 aaPredicted RBP15.92■□□□□ 0.14
CUX1-215ENST00000556210 PRM3Q9NNZ6 103 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 ZNRF3Q9ULT6 936 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 ABCC6O95255 1503 aa15.92■□□□□ 0.14
CUX1-215ENST00000556210 RASGRF2O14827 1237 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 SNHG28P0DPA3 235 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 MDH1P40925 334 aaKnown RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 CDK17Q00537 523 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 TKFCQ3LXA3 575 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 NBPF12Q5TAG4 269 aaPredicted RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 AENQ8WTP8 325 aaKnown RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 POLR3CQ9BUI4 534 aaPredicted RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 CXorf56Q9H5V9 222 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 ZWILCHQ9H900 591 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 ASTN1O14525 1302 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 LACTBP83111 547 aaPredicted RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 CUL1Q13616 776 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 DALRD3Q5D0E6 543 aaKnown RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 HIBCHQ6NVY1 386 aaPredicted RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 RHOT2Q8IXI1 618 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 FBXL13Q8NEE6 735 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 APOL6Q9BWW8 343 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 DEFB129Q9H1M3 183 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 PCDHA10Q9Y5I2 948 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 SYNJ2BP-COX16A0A087WUM0 186 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 TGFB1I1O43294 461 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 ITGB5P18084 799 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 SCP2P22307 547 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 MARCKSL1P49006 195 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 FAM47EQ6ZV65 393 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 KRT35Q92764 455 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 CD248Q9HCU0 757 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 KLC4Q9NSK0 619 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 COX16Q9P0S2 106 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 PIM2Q9P1W9 311 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 SNED1Q8TER0 1413 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 GMNCA6NCL1 334 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 ATP9AO75110 1047 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 CALRP27797 417 aaKnown RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 CCND2P30279 289 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 PPP3CAQ08209 521 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 EAPPQ56P03 285 aaPredicted RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 PPP1R21Q6ZMI0 780 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 CCDC13Q8IYE1 715 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 FBXO25Q8TCJ0 367 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 TATDN2Q93075 761 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 TBC1D22BQ9NU19 505 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 AIPL1Q9NZN9 384 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 SEL1LQ9UBV2 794 aa15.91■□□□□ 0.14
CUX1-215ENST00000556210 AJAP1Q9UKB5 411 aaPredicted RBP15.91■□□□□ 0.14
CUX1-215ENST00000556210 GJB6O95452 261 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 ORC1Q13415 861 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 KIAA1755Q5JYT7 1200 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 DCAF15Q66K64 600 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 LLGL2Q6P1M3 1020 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 C9orf72Q96LT7 481 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 TARS2Q9BW92 718 aaKnown RBP15.9■□□□□ 0.14
CUX1-215ENST00000556210 PCSK1NQ9UHG2 260 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 CNOT7Q9UIV1 285 aaKnown RBP15.9■□□□□ 0.14
CUX1-215ENST00000556210 PDE4DIPQ5VU43 2346 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 MYH10P35580 1976 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 SGK1O00141 431 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 SLC29A2Q14542 456 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 CDO1Q16878 200 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 LONRF1Q17RB8 773 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 PHLDB3Q6NSJ2 640 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 TTC16Q8NEE8 873 aa15.9■□□□□ 0.14
CUX1-215ENST00000556210 TMEM117Q9H0C3 514 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms