RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 FARP2O94887 1054 aaPredicted RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 HOXD8P13378 290 aaPredicted RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 HOXB4P17483 251 aaPredicted RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 UBA1P22314 1058 aaKnown RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 GUCY2CP25092 1073 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 NOGQ13253 232 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ARSHQ5FYA8 562 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 PDE12Q6L8Q7 609 aaKnown RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 CCDC62Q6P9F0 684 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ABHD15Q6UXT9 468 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 GPR142Q7Z601 462 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ALYREFQ86V81 257 aaKnown RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 TMEM174Q8WUU8 243 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ERCC4Q92889 916 aaPredicted RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 CDK5RAP3Q96JB5 506 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 CEP63Q96MT8 703 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 MED15Q96RN5 788 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 PPP1R9BQ96SB3 815 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ZIC5Q96T25 663 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 LXNQ9BS40 222 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 PANK2Q9BZ23 570 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 OSBPL7Q9BZF2 842 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ZSWIM4Q9H7M6 989 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 EFCC1Q9HA90 598 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ZFYVE28Q9HCC9 887 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 VTA1Q9NP79 307 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 NPHS2Q9NP85 383 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 OLFML3Q9NRN5 406 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 WRAP73Q9P2S5 460 aaPredicted RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 GGT7Q9UJ14 662 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 ODF2LQ9ULJ1 636 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 INPP5FQ9Y2H2 1132 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 PPME1Q9Y570 386 aa9.34□□□□□ -0.91
VPS29-203ENST00000546588 GPC6Q9Y625 555 aaPredicted RBP9.34□□□□□ -0.91
VPS29-203ENST00000546588 EMSYQ7Z589 1322 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 HMGB1P1B2RPK0 211 aaPredicted RBP9.33□□□□□ -0.92
VPS29-203ENST00000546588 E9PMD0 336 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 CA12O43570 354 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 MARCH6O60337 910 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 DKC1O60832 514 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS29-203ENST00000546588 STBD1O95210 358 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 PLA2G4BP0C869 781 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 MYCLP12524 364 aaPredicted RBP9.33□□□□□ -0.92
VPS29-203ENST00000546588 EPB42P16452 691 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 ZNF18P17022 549 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 COL8A1P27658 744 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 MSX1P28360 303 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 ADORA2AP29274 412 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 GTF2F1P35269 517 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS29-203ENST00000546588 AFMP43652 599 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 QARSP47897 775 aaKnown RBP9.33□□□□□ -0.92
VPS29-203ENST00000546588 MYL5Q02045 173 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 SP2Q02086 613 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 NEDD9Q14511 834 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 BMT2Q1RMZ1 405 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 MEI1Q5TIA1 1274 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 OLFML2BQ68BL8 750 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 METTL7BQ6UX53 244 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 C1orf186Q6ZWK4 172 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 HS2ST1Q7LGA3 356 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 PLEKHH3Q7Z736 793 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 ADSSL1Q8N142 457 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 SOCS4Q8WXH5 440 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 MAML3Q96JK9 1138 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 NACC1Q96RE7 527 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 GPAMQ9HCL2 828 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 JPH1Q9HDC5 661 aaPredicted RBP9.33□□□□□ -0.92
VPS29-203ENST00000546588 ANKEF1Q9NU02 776 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 SEL1LQ9UBV2 794 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 SLC9A2Q9UBY0 812 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 DDX41Q9UJV9 622 aaKnown RBP9.33□□□□□ -0.92
VPS29-203ENST00000546588 DNM3Q9UQ16 869 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 PCDHA10Q9Y5I2 948 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 KCNMB2Q9Y691 235 aa9.33□□□□□ -0.92
VPS29-203ENST00000546588 UBE4BO95155 1302 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 SCN10AQ9Y5Y9 1956 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 COBLO75128 1261 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 XYLBO75191 536 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 USP17L7P0C7H9 530 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 MAPTP10636 758 aaKnown RBP9.32□□□□□ -0.92
VPS29-203ENST00000546588 CASP1P29466 404 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 RARRES1P49788 294 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 PSMC5P62195 406 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 PSMC6P62333 389 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 GIT2Q14161 759 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 HSP90AA2PQ14568 343 aaPredicted RBP9.32□□□□□ -0.92
VPS29-203ENST00000546588 LBRQ14739 615 aaKnown RBP9.32□□□□□ -0.92
VPS29-203ENST00000546588 TAF1CQ15572 869 aaPredicted RBP9.32□□□□□ -0.92
VPS29-203ENST00000546588 CDKAL1Q5VV42 579 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 RINT1Q6NUQ1 792 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 TAPT1Q6NXT6 567 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 XKR5Q6UX68 686 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 ARMCX2Q7L311 632 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 MIER3Q7Z3K6 550 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 LUZP1Q86V48 1076 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 ZC3H3Q8IXZ2 948 aaKnown RBP9.32□□□□□ -0.92
VPS29-203ENST00000546588 GUF1Q8N442 669 aaKnown RBP9.32□□□□□ -0.92
VPS29-203ENST00000546588 KIAA0895Q8NCT3 520 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 RASSF8Q8NHQ8 419 aa9.32□□□□□ -0.92
VPS29-203ENST00000546588 DHX38Q92620 1227 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms