RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SPATA20Q8TB22 786 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 ACO2Q99798 780 aaKnown RBP22.79■■□□□ 1.24
CD44-222ENST00000526025 PDZD7Q9H5P4 517 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 PTPRHQ9HD43 1115 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 FAM105AQ9NUU6 356 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 EXOC1Q9NV70 894 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 FNDC1Q4ZHG4 1894 aaPredicted RBP22.79■■□□□ 1.24
CD44-222ENST00000526025 RHOBTB3O94955 611 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 GJB5O95377 273 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 PROZP22891 400 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 DCAF4L1Q3SXM0 396 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 KMT5BQ4FZB7 885 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 L1TD1Q5T7N2 865 aaKnown RBP22.78■■□□□ 1.24
CD44-222ENST00000526025 EPM2AIP1Q7L775 607 aaPredicted RBP22.78■■□□□ 1.24
CD44-222ENST00000526025 MRPL10Q7Z7H8 261 aaKnown RBP22.78■■□□□ 1.24
CD44-222ENST00000526025 ZNF598Q86UK7 904 aaKnown RBP22.78■■□□□ 1.24
CD44-222ENST00000526025 ECHDC2Q86YB7 292 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 CPB2Q96IY4 423 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 GSDMAQ96QA5 445 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 ADPGKQ9BRR6 497 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 EXOC7Q9UPT5 735 aa22.78■■□□□ 1.24
CD44-222ENST00000526025 ZMYM2Q9UBW7 1377 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.77■■□□□ 1.24
CD44-222ENST00000526025 TTLL13PA6NNM8 815 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 TOM1L1O75674 476 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 SMC2O95347 1197 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 GCNT3O95395 438 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 SMAD3P84022 425 aaKnown RBP22.77■■□□□ 1.24
CD44-222ENST00000526025 GTPBP4Q9BZE4 634 aaKnown RBP22.77■■□□□ 1.24
CD44-222ENST00000526025 RMND1Q9NWS8 449 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 TBC1D7Q9P0N9 293 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 PCDHB7Q9Y5E2 793 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 PCDHB2Q9Y5E7 798 aa22.77■■□□□ 1.24
CD44-222ENST00000526025 HOXA2O43364 376 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 CASP5P51878 434 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 HTRA4P83105 476 aaPredicted RBP22.76■■□□□ 1.23
CD44-222ENST00000526025 PNOCQ13519 176 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 BMT2Q1RMZ1 405 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 TMEM132AQ24JP5 1023 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 ZC2HC1CQ53FD0 456 aaPredicted RBP22.76■■□□□ 1.23
CD44-222ENST00000526025 ZNF507Q8TCN5 953 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 PGBD4Q96DM1 585 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 ACCSQ96QU6 501 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 TARS2Q9BW92 718 aaKnown RBP22.76■■□□□ 1.23
CD44-222ENST00000526025 TMEM206Q9H813 350 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 RC3H2Q9HBD1 1191 aaKnown RBP22.76■■□□□ 1.23
CD44-222ENST00000526025 LRFN2Q9ULH4 789 aa22.76■■□□□ 1.23
CD44-222ENST00000526025 CITO14578 2027 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 ABLIM1O14639 778 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 HNRNPDLO14979 420 aaKnown RBP22.75■■□□□ 1.23
CD44-222ENST00000526025 MBD3O95983 291 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 MYBP10242 640 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 ATF7P17544 494 aaPredicted RBP22.75■■□□□ 1.23
CD44-222ENST00000526025 MCM4P33991 863 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 MPZL3Q6UWV2 235 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 HACE1Q8IYU2 909 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 EIF2AQ9BY44 585 aaKnown RBP22.75■■□□□ 1.23
CD44-222ENST00000526025 FGFBP2Q9BYJ0 223 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 TRIM6Q9C030 488 aaPredicted RBP22.75■■□□□ 1.23
CD44-222ENST00000526025 PCDHA11Q9Y5I1 949 aa22.75■■□□□ 1.23
CD44-222ENST00000526025 RBAK-RBAKDNI3L0D1 243 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 DGKIO75912 1065 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 MCF2P10911 925 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 LIG4P49917 911 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 RAB30Q15771 203 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 EEF1DP3Q658K8 133 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 HPS3Q969F9 1004 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 SMARCE1Q969G3 411 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 ZNF689Q96CS4 500 aaPredicted RBP22.74■■□□□ 1.23
CD44-222ENST00000526025 BICD1Q96G01 975 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 RAD9AQ99638 391 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 UBN1Q9NPG3 1134 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 IPPQ9Y573 584 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 INSL6Q9Y581 213 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 STYXL1Q9Y6J8 313 aa22.74■■□□□ 1.23
CD44-222ENST00000526025 NPTXRO95502 500 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 PTMSP20962 102 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 SNRPFP62306 86 aaKnown RBP22.73■■□□□ 1.23
CD44-222ENST00000526025 MCL1Q07820 350 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 NOLC1Q14978 699 aaKnown RBP eCLIP22.73■■□□□ 1.23
CD44-222ENST00000526025 ZNF568Q3ZCX4 644 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 FAM109BQ6ICB4 259 aaPredicted RBP22.73■■□□□ 1.23
CD44-222ENST00000526025 SLFN12LQ6IEE8 588 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 KIAA0895Q8NCT3 520 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 SMG8Q8ND04 991 aaKnown RBP22.73■■□□□ 1.23
CD44-222ENST00000526025 SP7Q8TDD2 431 aaPredicted RBP22.73■■□□□ 1.23
CD44-222ENST00000526025 SCFD1Q8WVM8 642 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 CDT1Q9H211 546 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 CLSTN2Q9H4D0 955 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 PCDHA5Q9Y5H7 936 aa22.73■■□□□ 1.23
CD44-222ENST00000526025 INPPL1O15357 1258 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 CLDN3O15551 220 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 KIF20AO95235 890 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 STK4Q13043 487 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 KYAT1Q16773 422 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 GPT2Q8TD30 523 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 ZBED2Q9BTP6 218 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 SLC39A2Q9NP94 309 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 USP20Q9Y2K6 914 aa22.72■■□□□ 1.23
CD44-222ENST00000526025 RALGAPA2Q2PPJ7 1873 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 165.1 ms