RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 M0QZ92 97 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 PRPSAP2O60256 369 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 MDM2Q00987 491 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 ITKQ08881 620 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 NLRP14Q86W24 1093 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 TMEM35BQ8NCS4 154 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CFAP57Q96MR6 1250 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 VCXQ9H320 206 aa12.5□□□□□ -0.41
SYNPO-204ENST00000519664 AGO2Q9UKV8 859 aaKnown RBP12.5□□□□□ -0.41
SYNPO-204ENST00000519664 CNTNAP4Q9C0A0 1308 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 EIF4E1BA6NMX2 242 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 H0Y3Z8 333 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 MRPS9P82933 396 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 NFX1Q12986 1120 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 GPR162Q16538 588 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF568Q3ZCX4 644 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SEZ6Q53EL9 994 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 RINT1Q6NUQ1 792 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 TRAPPC11Q7Z392 1133 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 DNAAF3Q8N9W5 541 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 KCNH7Q9NS40 1196 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 DBR1Q9UK59 544 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SUGT1Q9Y2Z0 365 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ESYT2A0FGR8 921 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 PHF20L1A8MW92 1017 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 GPS1Q13098 491 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SEMA3FQ13275 785 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 OR6B3Q8NGW1 331 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 TTC17Q96AE7 1141 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 MTMR8Q96EF0 704 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 DUSP9Q99956 384 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 DDX4Q9NQI0 724 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 DCTN4Q9UJW0 460 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 FOXN3O00409 490 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ZBTB39O15060 712 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 PPP1R37O75864 691 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 IRAK1P51617 712 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SNRNP35Q16560 246 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF699Q32M78 642 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 LRP10Q7Z4F1 713 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SCFD1Q8WVM8 642 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SUDS3Q9H7L9 328 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ALG13Q9NP73 1137 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 A0A0G2JND7 137 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SPAG7O75391 227 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 AKAP3O75969 853 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SASH3O75995 380 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 LUC7L3O95232 432 aaKnown RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ARP10275 920 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 IRX1P78414 480 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SLFN12LQ6IEE8 588 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 CEP120Q8N960 986 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 RAB3IL1Q8TBN0 382 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ARL8AQ96BM9 186 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 BTBD6Q96KE9 485 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 SCYL1Q96KG9 808 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 VCPKMTQ9H867 229 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 TUFT1Q9NNX1 390 aa12.49□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF70Q9UC06 446 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-204ENST00000519664 NWD1Q149M9 1564 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 GRID2IPA4D2P6 1211 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 CRCPO75575 148 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 HOXA7P31268 230 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-204ENST00000519664 BARGINQ6ZT62 677 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ZFPM1Q8IX07 1006 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ARHGAP24Q8N264 748 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 DAGLBQ8NCG7 672 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ANKZF1Q9H8Y5 726 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF302Q9NR11 478 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 BCL9O00512 1426 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 CPP00450 1065 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 NR3C2P08235 984 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF772Q68DY9 489 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-204ENST00000519664 SAMD7Q7Z3H4 446 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 THAP2Q9H0W7 228 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 OSGEPQ9NPF4 335 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 GOLGA8RI6L899 631 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 COMTP21964 271 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 CHRNA3P32297 505 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 KIAA1755Q5JYT7 1200 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 FBXW10Q5XX13 1052 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 CENPUQ71F23 418 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ZC3H18Q86VM9 953 aaKnown RBP12.48□□□□□ -0.41
SYNPO-204ENST00000519664 RNF149Q8NC42 400 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 ARMC2Q8NEN0 867 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 PPP4R1Q8TF05 950 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 SLC38A10Q9HBR0 1119 aa12.48□□□□□ -0.41
SYNPO-204ENST00000519664 FNDC3AQ9Y2H6 1198 aaKnown RBP12.48□□□□□ -0.41
SYNPO-204ENST00000519664 TJP3O95049 919 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 ZBED1O96006 694 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 PON1P27169 355 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 RPS6P62753 249 aaKnown RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 KRT17Q04695 432 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 TBX2Q13207 712 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 NT5DC1Q5TFE4 455 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 SYT2Q8N9I0 419 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 USP38Q8NB14 1042 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 NKX2-3Q8TAU0 364 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 PSPC1Q8WXF1 523 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms