RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	ZNF233	A6NK53	670 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	ZC3H11A	O75152	810 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	MAF	O75444	373 aa	Predicted RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	GGPS1	O95749	300 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	FAM228B	P0C875	321 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	H2AFX	P16104	143 aa	Predicted RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	MCM3	P25205	808 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	EFNA5	P52803	228 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	SP4	Q02446	784 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	PTK2	Q05397	1052 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	ITIH3	Q06033	890 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	TTLL4	Q14679	1199 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	DRAP1	Q14919	205 aa	Predicted RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	TAF1C	Q15572	869 aa	Predicted RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	SNRNP35	Q16560	246 aa	Known RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	CBWD6	Q4V339	395 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	EPC2	Q52LR7	807 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	CBWD3	Q5JTY5	395 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	CBWD5	Q5RIA9	395 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	KRT39	Q6A163	491 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	ALKBH5	Q6P6C2	394 aa	Known RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	ENOSF1	Q7L5Y1	443 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	ZNF571	Q7Z3V5	609 aa	Predicted RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	LMO3	Q8TAP4	145 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	DEPTOR	Q8TB45	409 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	PARD3B	Q8TEW8	1205 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	BSND	Q8WZ55	320 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	POMGNT1	Q8WZA1	660 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	CEP89	Q96ST8	783 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	SMARCAD1	Q9H4L7	1026 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	TMEM8A	Q9HCN3	771 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	TXNRD2	Q9NNW7	524 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	MORF4L1	Q9UBU8	362 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	ADAMTS1	Q9UHI8	967 aa		11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	DIS3	Q9Y2L1	958 aa	Known RBP	11.76	□□□□□ -0.53
ITSN1-231	ENST00000489261	MACROD2	A1Z1Q3	448 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	ANKRD63	C9JTQ0	380 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261		F8VZ95	297 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261		K7ERI5	159 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	NOP56	O00567	594 aa	Known RBP	11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	ASAP2	O43150	1006 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	EXTL3	O43909	919 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	H2AFZ	P0C0S5	128 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	TRIM49	P0CI25	452 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	TRIM49C	P0CI26	452 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	ADSS	P30520	456 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	LIG4	P49917	911 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	MXI1	P50539	228 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	GPC3	P51654	580 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	MFAP3	P55082	362 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	LAMC2	Q13753	1193 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	MXD4	Q14582	209 aa	Predicted RBP	11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	NAA30	Q147X3	362 aa	Predicted RBP	11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	KIF22	Q14807	665 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	BRD3	Q15059	726 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	KIAA0753	Q2KHM9	967 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	CCDC62	Q6P9F0	684 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	H2AFV	Q71UI9	128 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	DHX37	Q8IY37	1157 aa	Known RBP	11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	SCFD2	Q8WU76	684 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	BICD1	Q96G01	975 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	PCYT2	Q99447	389 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	GPR20	Q99678	358 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	SH2D3A	Q9BRG2	576 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	IKZF4	Q9H2S9	585 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	ZFYVE28	Q9HCC9	887 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	VTA1	Q9NP79	307 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	NAGPA	Q9UK23	515 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	NENF	Q9UMX5	172 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	SNX12	Q9UMY4	172 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	HYOU1	Q9Y4L1	999 aa		11.75	□□□□□ -0.53
ITSN1-231	ENST00000489261	KIAA1217	Q5T5P2	1943 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	RBM47	A0AV96	593 aa	Known RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	CCDC85C	A6NKD9	419 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	CES2	O00748	559 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	HBP1	O60381	514 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	EVI5	O60447	810 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	ATP1A1	P05023	1023 aa	Known RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	TNFAIP3	P21580	790 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	GLRA2	P23416	452 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	TCF7	P36402	384 aa	Predicted RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	AP3M2	P53677	418 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	NAP1L1	P55209	391 aa	Known RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	CLDN10	P78369	228 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	CAP1	Q01518	475 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	APBA1	Q02410	837 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	SP3	Q02447	781 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	ARID5A	Q03989	594 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	CYP24A1	Q07973	514 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	PPP3CA	Q08209	521 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	C1orf220	Q5T0J3	134 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	TEX35	Q5T0J7	233 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	CCDC70	Q6NSX1	233 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	ZPBP2	Q6X784	338 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	ZNF572	Q7Z3I7	529 aa	Predicted RBP	11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	SLC30A5	Q8TAD4	765 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	ATP8B4	Q8TF62	1192 aa		11.74	□□□□□ -0.53
ITSN1-231	ENST00000489261	DHX38	Q92620	1227 aa	Known RBP	11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms