RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 ITGA4P13612 1032 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 IDEP14735 1019 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 ATF7P17544 494 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-205ENST00000487150 LAG3P18627 525 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 PPM1AP35813 382 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 CACNB1Q02641 598 aaPredicted RBP16.08■□□□□ 0.16
LIMS3-205ENST00000487150 KYAT1Q16773 422 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 HAUS6Q7Z4H7 955 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 FSIP1Q8NA03 581 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 BICD1Q96G01 975 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 CPB2Q96IY4 423 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 TRIM9Q9C026 710 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 PDZD7Q9H5P4 517 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 RSAD1Q9HA92 442 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 MTMR10Q9NXD2 777 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 EXOC7Q9UPT5 735 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 HPSEQ9Y251 543 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 GIT1Q9Y2X7 761 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 IPPQ9Y573 584 aa16.08■□□□□ 0.16
LIMS3-205ENST00000487150 TTC3P53804 2025 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 FRMD3A2A2Y4 597 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 C5orf67F2Z3F1 127 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 HNRNPDLO14979 420 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 GTPBP6O43824 516 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 TOM1L1O75674 476 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 CTNNB1P35222 781 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 ASIC1P78348 528 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 ZNF568Q3ZCX4 644 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 PAN2Q504Q3 1202 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 HERC4Q5GLZ8 1057 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 NOMO2Q5JPE7 1267 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 UBXN11Q5T124 520 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 SPOUT1Q5T280 376 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 KANK3Q6NY19 840 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 FBXO22Q8NEZ5 403 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 ARNTL2Q8WYA1 636 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 CCDC47Q96A33 483 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 DNAJC19Q96DA6 116 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 IPO9Q96P70 1041 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 MRPL44Q9H9J2 332 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 TOPORSQ9NS56 1045 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 PANK4Q9NVE7 773 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 PCDHB13Q9Y5F0 798 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 PCDHB12Q9Y5F1 795 aa16.07■□□□□ 0.16
LIMS3-205ENST00000487150 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 LAMA2P24043 3122 aaKnown RBP16.07■□□□□ 0.16
LIMS3-205ENST00000487150 NPTXRO95502 500 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 MCF2P10911 925 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 LIG4P49917 911 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 PTPROQ16827 1216 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 CLLU1OSQ5K130 101 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 MPZL3Q6UWV2 235 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 SFR1Q86XK3 245 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 MAP4K3Q8IVH8 894 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 TMEM192Q8IY95 271 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 P2RX5Q93086 422 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 RPS6KC1Q96S38 1066 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 ACO2Q99798 780 aaKnown RBP16.06■□□□□ 0.16
LIMS3-205ENST00000487150 C7orf25Q9BPX7 421 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 TCHPQ9BT92 498 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 CCDC94Q9BW85 323 aaPredicted RBP16.06■□□□□ 0.16
LIMS3-205ENST00000487150 GDPD2Q9HCC8 539 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 POLD4Q9HCU8 107 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 STK39Q9UEW8 545 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 HOOK1Q9UJC3 728 aaKnown RBP16.06■□□□□ 0.16
LIMS3-205ENST00000487150 TBX20Q9UMR3 447 aa16.06■□□□□ 0.16
LIMS3-205ENST00000487150 MRPL42Q9Y6G3 142 aaKnown RBP16.06■□□□□ 0.16
LIMS3-205ENST00000487150 A0A1B0GVL5 298 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 PVALEFA0A1B0GWK0 134 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 INPPL1O15357 1258 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 CLDN3O15551 220 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 PIGRP01833 764 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 BMPR1AP36894 532 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 YARSP54577 528 aaKnown RBP16.05■□□□□ 0.16
LIMS3-205ENST00000487150 GTF2BQ00403 316 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 RNASELQ05823 741 aaKnown RBP16.05■□□□□ 0.16
LIMS3-205ENST00000487150 HSP90AA2PQ14568 343 aaPredicted RBP16.05■□□□□ 0.16
LIMS3-205ENST00000487150 GRIN2CQ14957 1233 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 NOLC1Q14978 699 aaKnown RBP eCLIP16.05■□□□□ 0.16
LIMS3-205ENST00000487150 EPC2Q52LR7 807 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 Q7L0L9 218 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 HELQQ8TDG4 1101 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 FAM161BQ96MY7 647 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 CASD1Q96PB1 797 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 EIF2AQ9BY44 585 aaKnown RBP16.05■□□□□ 0.16
LIMS3-205ENST00000487150 LMAN2LQ9H0V9 348 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 NXF3Q9H4D5 531 aaKnown RBP16.05■□□□□ 0.16
LIMS3-205ENST00000487150 LMCD1Q9NZU5 365 aa16.05■□□□□ 0.16
LIMS3-205ENST00000487150 UBE4BO95155 1302 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 ACTN4O43707 911 aaKnown RBP16.04■□□□□ 0.16
LIMS3-205ENST00000487150 NR1I2O75469 434 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 GCNT3O95395 438 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 FOSL2P15408 326 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 ALDH7A1P49419 539 aaKnown RBP16.04■□□□□ 0.16
LIMS3-205ENST00000487150 NDUFA8P51970 172 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 COASYQ13057 564 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 NT5DC1Q5TFE4 455 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 SLFN12LQ6IEE8 588 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 AGMOQ6ZNB7 445 aa16.04■□□□□ 0.16
LIMS3-205ENST00000487150 UNC13DQ70J99 1090 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms