RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CCT2P78371 535 aaKnown RBP8.03□□□□□ -1.12
USP40-213ENST00000483216 DUSP2Q05923 314 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 MALLQ13021 153 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 ABCB5Q2M3G0 1257 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 ZNF585AQ6P3V2 769 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 FAM180AQ6UWF9 173 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 D2HGDHQ8N465 521 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 BORCS6Q96GS4 357 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 FUBP3Q96I24 572 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP40-213ENST00000483216 CDK5RAP1Q96SZ6 601 aaKnown RBP8.03□□□□□ -1.12
USP40-213ENST00000483216 SH3BP1Q9Y3L3 701 aa8.03□□□□□ -1.12
USP40-213ENST00000483216 GASTP01350 101 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 ZNF20P17024 532 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 ACO1P21399 889 aaKnown RBP8.02□□□□□ -1.13
USP40-213ENST00000483216 CASRP41180 1078 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 HHEXQ03014 270 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 R3HDM1Q15032 1099 aaKnown RBP8.02□□□□□ -1.13
USP40-213ENST00000483216 CLUL1Q15846 466 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 LCE1DQ5T752 114 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 MFSD5Q6N075 450 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 OR5M3Q8NGP4 307 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 ARL8AQ96BM9 186 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 RBM12Q9NTZ6 932 aaKnown RBP8.02□□□□□ -1.13
USP40-213ENST00000483216 ZBTB21Q9ULJ3 1066 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 TESMINQ9Y4I5 508 aa8.02□□□□□ -1.13
USP40-213ENST00000483216 ADRB1P08588 477 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 MCAMP43121 646 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 EXOSC10Q01780 885 aaKnown RBP8.01□□□□□ -1.13
USP40-213ENST00000483216 MST1LQ2TV78 715 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 FKBP15Q5T1M5 1219 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 ANKRD35Q8N283 1001 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 LILRA3Q8N6C8 439 aaPredicted RBP8.01□□□□□ -1.13
USP40-213ENST00000483216 ZNF480Q8WV37 535 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 ZNF512Q96ME7 567 aaPredicted RBP8.01□□□□□ -1.13
USP40-213ENST00000483216 ADOQ96SZ5 270 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 SLC13A1Q9BZW2 595 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 GPRC5DQ9NZD1 345 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 TSC22D4Q9Y3Q8 395 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 TNKSO95271 1327 aa8.01□□□□□ -1.13
USP40-213ENST00000483216 KLHL33A6NCF5 533 aa8□□□□□ -1.13
USP40-213ENST00000483216 MUSKO15146 869 aa8□□□□□ -1.13
USP40-213ENST00000483216 AKR1B10O60218 316 aa8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA12O60330 932 aa8□□□□□ -1.13
USP40-213ENST00000483216 ITGA10O75578 1167 aa8□□□□□ -1.13
USP40-213ENST00000483216 CRHR1P34998 444 aa8□□□□□ -1.13
USP40-213ENST00000483216 BUD31P41223 144 aaPredicted RBP8□□□□□ -1.13
USP40-213ENST00000483216 PPP3CAQ08209 521 aa8□□□□□ -1.13
USP40-213ENST00000483216 MRPL49Q13405 166 aaKnown RBP8□□□□□ -1.13
USP40-213ENST00000483216 PRKD1Q15139 912 aaPredicted RBP8□□□□□ -1.13
USP40-213ENST00000483216 CDSNQ15517 529 aa8□□□□□ -1.13
USP40-213ENST00000483216 SGMS1Q86VZ5 419 aa8□□□□□ -1.13
USP40-213ENST00000483216 ZNF808Q8N4W9 903 aaPredicted RBP8□□□□□ -1.13
USP40-213ENST00000483216 JADE3Q92613 823 aa8□□□□□ -1.13
USP40-213ENST00000483216 IL17RAQ96F46 866 aa8□□□□□ -1.13
USP40-213ENST00000483216 SLC2A13Q96QE2 648 aa8□□□□□ -1.13
USP40-213ENST00000483216 ADI1Q9BV57 179 aa8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA9Q9Y5G4 932 aaKnown RBP8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA8Q9Y5G5 932 aa8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA7Q9Y5G6 932 aa8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA6Q9Y5G7 932 aa8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA3Q9Y5H0 932 aa8□□□□□ -1.13
USP40-213ENST00000483216 PCDHGA2Q9Y5H1 932 aa8□□□□□ -1.13
USP40-213ENST00000483216 MRFAP1Q9Y605 127 aa8□□□□□ -1.13
USP40-213ENST00000483216 HOXA3O43365 443 aaPredicted RBP7.99□□□□□ -1.13
USP40-213ENST00000483216 GZMKP49863 264 aa7.99□□□□□ -1.13
USP40-213ENST00000483216 PCBP2Q15366 365 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP40-213ENST00000483216 SPTY2D1Q68D10 685 aaPredicted RBP7.99□□□□□ -1.13
USP40-213ENST00000483216 MIEF2Q96C03 454 aa7.99□□□□□ -1.13
USP40-213ENST00000483216 DDX56Q9NY93 547 aaKnown RBP7.99□□□□□ -1.13
USP40-213ENST00000483216 HECAQ9UBI9 543 aaPredicted RBP7.99□□□□□ -1.13
USP40-213ENST00000483216 TRPS1Q9UHF7 1281 aa7.99□□□□□ -1.13
USP40-213ENST00000483216 C1QTNF3-AMACRE9PGA6 284 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 CYP27B1O15528 508 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 STC2O76061 302 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 MGAT2Q10469 447 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 ELAVL1Q15717 326 aaKnown RBP7.98□□□□□ -1.13
USP40-213ENST00000483216 PTPN21Q16825 1174 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 Q6ZVL8 140 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 APBB1IPQ7Z5R6 666 aaPredicted RBP7.98□□□□□ -1.13
USP40-213ENST00000483216 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.98□□□□□ -1.13
USP40-213ENST00000483216 HOXB13Q92826 284 aaPredicted RBP7.98□□□□□ -1.13
USP40-213ENST00000483216 CDC5LQ99459 802 aaKnown RBP7.98□□□□□ -1.13
USP40-213ENST00000483216 BCO1Q9HAY6 547 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 DMRT3Q9NQL9 472 aa7.98□□□□□ -1.13
USP40-213ENST00000483216 CAPN14A8MX76 684 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 MFAP3LO75121 409 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 GSPT1P15170 499 aaKnown RBP7.97□□□□□ -1.13
USP40-213ENST00000483216 ECHS1P30084 290 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 ADSLP30566 484 aaPredicted RBP7.97□□□□□ -1.13
USP40-213ENST00000483216 HIBADHP31937 336 aaKnown RBP7.97□□□□□ -1.13
USP40-213ENST00000483216 WASP42768 502 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 APBA1Q02410 837 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 ACAP2Q15057 778 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 PDZD4Q76G19 769 aaPredicted RBP7.97□□□□□ -1.13
USP40-213ENST00000483216 OR7D4Q8NG98 312 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 STAG1Q8WVM7 1258 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 SMAD5Q99717 465 aaKnown RBP7.97□□□□□ -1.13
USP40-213ENST00000483216 PDCD2LQ9BRP1 358 aa7.97□□□□□ -1.13
USP40-213ENST00000483216 XPOTO43592 962 aaKnown RBP7.96□□□□□ -1.14
USP40-213ENST00000483216 NDUFS2O75306 463 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms