RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 N4BP3O15049 544 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 GTPBP6O43824 516 aaPredicted RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 ATF7P17544 494 aaPredicted RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 DNAJB2P25686 324 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 ATF7IP2Q5U623 682 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 KANK3Q6NY19 840 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 SLC27A1Q6PCB7 646 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 SPDYE1Q8NFV5 336 aaPredicted RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 ZNF689Q96CS4 500 aaPredicted RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 LRCH3Q96II8 777 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 GBP4Q96PP9 640 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 YME1L1Q96TA2 773 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 ACO2Q99798 780 aaKnown RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 TARS2Q9BW92 718 aaKnown RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 EIF2AQ9BY44 585 aaKnown RBP13.13□□□□□ -0.31
VPS13D-204ENST00000469054 PDZD7Q9H5P4 517 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 TBC1D7Q9P0N9 293 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 TBX20Q9UMR3 447 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 LOXHD1Q8IVV2 1947 aa13.13□□□□□ -0.31
VPS13D-204ENST00000469054 TCHHQ07283 1943 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 TRIOBPQ9H2D6 2365 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 HOXA2O43364 376 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 NR1I2O75469 434 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 PPP1R37O75864 691 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 GCNT3O95395 438 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 ZC2HC1CQ53FD0 456 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-204ENST00000469054 EEF1DP3Q658K8 133 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 ZPBP2Q6X784 338 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 MRPL10Q7Z7H8 261 aaKnown RBP13.12□□□□□ -0.31
VPS13D-204ENST00000469054 RNF169Q8NCN4 708 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 SMG8Q8ND04 991 aaKnown RBP13.12□□□□□ -0.31
VPS13D-204ENST00000469054 TIFAQ96CG3 184 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 PGBD4Q96DM1 585 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 TIGD1Q96MW7 591 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 ADPGKQ9BRR6 497 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 STRA6Q9BX79 667 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 TRIM6Q9C030 488 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-204ENST00000469054 NKX2-4Q9H2Z4 354 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 RC3H2Q9HBD1 1191 aaKnown RBP13.12□□□□□ -0.31
VPS13D-204ENST00000469054 PTPRHQ9HD43 1115 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 TNFSF13BQ9Y275 285 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 IPPQ9Y573 584 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 PCDHB13Q9Y5F0 798 aa13.12□□□□□ -0.31
VPS13D-204ENST00000469054 LAMA3Q16787 3333 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 LCHNA4D1U4 455 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 KLRC4O43908 158 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 TOM1L1O75674 476 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 NPTXRO95502 500 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 CA3P07451 260 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 PRR29P0C7W0 189 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 FGFR1P11362 822 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 GATMP50440 423 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 FXR1P51114 621 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS13D-204ENST00000469054 EHHADHQ08426 723 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 ALCAMQ13740 583 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 FAM26FQ5R3K3 315 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 APBB1IPQ7Z5R6 666 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-204ENST00000469054 MAP4K3Q8IVH8 894 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 SP7Q8TDD2 431 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-204ENST00000469054 LPPQ93052 612 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 HPS3Q969F9 1004 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 HVCN1Q96D96 273 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 BICD1Q96G01 975 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 FGFBP2Q9BYJ0 223 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 TMEM117Q9H0C3 514 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 SLC28A3Q9HAS3 691 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 RNF19AQ9NV58 838 aa13.11□□□□□ -0.31
VPS13D-204ENST00000469054 TBKBP1A7MCY6 615 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 MEIS3P2A8K0S8 358 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 ABLIM1O14639 778 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 KINO60870 393 aaKnown RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 PIGRP01833 764 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 MYBP10242 640 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 ITGA4P13612 1032 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 PROZP22891 400 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 LIG4P49917 911 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 CASP5P51878 434 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 DPYDQ12882 1025 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 BTG3Q14201 252 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 POSTNQ15063 836 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 DCAF4L1Q3SXM0 396 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 KMT5BQ4FZB7 885 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 CLLU1OSQ5K130 101 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 L1TD1Q5T7N2 865 aaKnown RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 GPR153Q6NV75 609 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 MPZL3Q6UWV2 235 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 AGMOQ6ZNB7 445 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 ELOA2Q8IYF1 753 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 CMTR2Q8IYT2 770 aaKnown RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 HACE1Q8IYU2 909 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 ABI1Q8IZP0 508 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 ZBTB45Q96K62 511 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 CASD1Q96PB1 797 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 TCHPQ9BT92 498 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 NXF3Q9H4D5 531 aaKnown RBP13.1□□□□□ -0.31
VPS13D-204ENST00000469054 UBN1Q9NPG3 1134 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 HES2Q9Y543 173 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 TTC3P53804 2025 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 MICAL3Q7RTP6 2002 aa13.1□□□□□ -0.31
VPS13D-204ENST00000469054 TMEM265A0A087WTH1 108 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms