RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SYKP43405 635 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 CSPP1Q1MSJ5 1256 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 ATF7IP2Q5U623 682 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 HAUS6Q7Z4H7 955 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 SFR1Q86XK3 245 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 HACE1Q8IYU2 909 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 HELQQ8TDG4 1101 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 ARNTL2Q8WYA1 636 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 TMEM117Q9H0C3 514 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 SEL1LQ9UBV2 794 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 SERTAD1Q9UHV2 236 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 HPSEQ9Y251 543 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 IPPQ9Y573 584 aa25.12■■□□□ 1.61
CCDC28B-203ENST00000461819 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 SCP2P22307 547 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 NDUFA8P51970 172 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 CLLU1OSQ5K130 101 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 NT5DC1Q5TFE4 455 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 TAS1R3Q7RTX0 852 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 SPRED2Q7Z698 418 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 CCDC65Q8IXS2 484 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 SLC17A8Q8NDX2 589 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 APOL6Q9BWW8 343 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 TRIM9Q9C026 710 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 RNF19AQ9NV58 838 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 PANK4Q9NVE7 773 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 USP25Q9UHP3 1055 aa25.11■■□□□ 1.61
CCDC28B-203ENST00000461819 CHD7Q9P2D1 2997 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 SLFN14P0C7P3 912 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 ITGA4P13612 1032 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 AFMP43652 599 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 ASIC1P78348 528 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 GRIN2CQ14957 1233 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 GLB1LQ6UWU2 654 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 APBB1IPQ7Z5R6 666 aaPredicted RBP25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 MRPL10Q7Z7H8 261 aaKnown RBP25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 SMG8Q8ND04 991 aaKnown RBP25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 BICD1Q96G01 975 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 C17orf80Q9BSJ5 609 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 NXF3Q9H4D5 531 aaKnown RBP25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 MTMR10Q9NXD2 777 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 MRPL42Q9Y6G3 142 aaKnown RBP25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 CDH23Q9H251 3354 aa25.1■■□□□ 1.61
CCDC28B-203ENST00000461819 FAM237AA0A1B0GTK4 181 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 MEIS3P2A8K0S8 358 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 ACTN4O43707 911 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 NMT1P30419 496 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 ABCD1P33897 745 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 ERVK-21P61565 698 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 DCAF4L1Q3SXM0 396 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 HERC4Q5GLZ8 1057 aaPredicted RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 SPOUT1Q5T280 376 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 SAMD11Q96NU1 681 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 CASD1Q96PB1 797 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 ACO2Q99798 780 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 GOLPH3LQ9H4A5 285 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 PRDM12Q9H4Q4 367 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 MRPL44Q9H9J2 332 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 INPP5FQ9Y2H2 1132 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 RWDD3Q9Y3V2 267 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 HES2Q9Y543 173 aa25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 TDRD15B5MCY1 1934 aaKnown RBP25.09■■□□□ 1.61
CCDC28B-203ENST00000461819 CTNNB1P35222 781 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 ZNF568Q3ZCX4 644 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 EEF1DP3Q658K8 133 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 LRRC43Q8N309 656 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 C7orf25Q9BPX7 421 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 TARS2Q9BW92 718 aaKnown RBP25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 MRPL9Q9BYD2 267 aaKnown RBP25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 RSAD1Q9HA92 442 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 UBN1Q9NPG3 1134 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 TBC1D7Q9P0N9 293 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 TBX20Q9UMR3 447 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 TNFSF13BQ9Y275 285 aa25.08■■□□□ 1.61
CCDC28B-203ENST00000461819 FRMD3A2A2Y4 597 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 AGMOQ6ZNB7 445 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 TMEM192Q8IY95 271 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 GRAMD1CQ8IYS0 662 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 FBXO22Q8NEZ5 403 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 URGCPQ8TCY9 931 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 RSPH1Q8WYR4 309 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 GUCD1Q96NT3 240 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 FIZ1Q96SL8 496 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 TCHPQ9BT92 498 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 BLZF1Q9H2G9 400 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 ANKFY1Q9P2R3 1169 aa25.07■■□□□ 1.6
CCDC28B-203ENST00000461819 CASP1P29466 404 aa25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 COASYQ13057 564 aa25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 EPC2Q52LR7 807 aa25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 CNNM4Q6P4Q7 775 aa25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 CLP1Q92989 425 aaKnown RBP25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 PAGE5Q96GU1 130 aa25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 GAS2L1Q99501 681 aaPredicted RBP25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 CDX2Q99626 313 aaPredicted RBP25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 OLFML3Q9NRN5 406 aa25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 TYW1Q9NV66 732 aaKnown RBP25.06■■□□□ 1.6
CCDC28B-203ENST00000461819 HNRNPDLO14979 420 aaKnown RBP25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 OFD1O75665 1012 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 GCNT3O95395 438 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 AKAP5P24588 427 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms