RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 MAGEB2O15479 319 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 POLR2DO15514 142 aaKnown RBP13.46□□□□□ -0.25
PTPRF-208ENST00000437607 ZNF202O95125 648 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 FGFR4P22455 802 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 CDC25AP30304 524 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 SFNP31947 248 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 GPC3P51654 580 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 VCPP55072 806 aaKnown RBP13.46□□□□□ -0.25
PTPRF-208ENST00000437607 PTPN21Q16825 1174 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 RRAGBQ5VZM2 374 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 FMR1NBQ8N0W7 255 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-208ENST00000437607 IQUBQ8NA54 791 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 CNNM3Q8NE01 707 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 RDM1Q8NG50 284 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 NT5C3AQ9H0P0 336 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 CLSTN2Q9H4D0 955 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 MAGEF1Q9HAY2 307 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 ENTPD7Q9NQZ7 604 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 HOOK1Q9UJC3 728 aaKnown RBP13.46□□□□□ -0.25
PTPRF-208ENST00000437607 AKT3Q9Y243 479 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 SAMM50Q9Y512 469 aa13.46□□□□□ -0.25
PTPRF-208ENST00000437607 DOCK8Q8NF50 2099 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 OATP04181 439 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 PLCG1P19174 1290 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 EIF4BP23588 611 aaKnown RBP13.45□□□□□ -0.26
PTPRF-208ENST00000437607 PTPN5P54829 565 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 PRKCEQ02156 737 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 DRP2Q13474 957 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 SUGP1Q8IWZ8 645 aaKnown RBP13.45□□□□□ -0.26
PTPRF-208ENST00000437607 SLC39A11Q8N1S5 342 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 LRRC43Q8N309 656 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 ENGASEQ8NFI3 743 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 FAM167AQ96KS9 214 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 ZNF558Q96NG5 402 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 CEP89Q96ST8 783 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 TNMDQ9H2S6 317 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 CUEDC2Q9H467 287 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 NGRNQ9NPE2 291 aaKnown RBP13.45□□□□□ -0.26
PTPRF-208ENST00000437607 STK17AQ9UEE5 414 aa13.45□□□□□ -0.26
PTPRF-208ENST00000437607 PUF60Q9UHX1 559 aaKnown RBP13.45□□□□□ -0.26
PTPRF-208ENST00000437607 DOCK6Q96HP0 2047 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 A0A087X0B3 334 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 A0A0U1RQF3 1178 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 HOXA2O43364 376 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 CSDE1O75534 798 aaKnown RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 STBD1O95210 358 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 PDGFBP01127 241 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 DARSP14868 501 aaKnown RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 ZSCAN20P17040 1043 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 SP100P23497 879 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 CYP4A11Q02928 519 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 SNW1Q13573 536 aaKnown RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 EPHA7Q15375 998 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 TARBP2Q15633 366 aaKnown RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 TMEM119Q4V9L6 283 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 KRBA2Q6ZNG9 492 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 TMC7Q7Z402 723 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 HELQQ8TDG4 1101 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 TIGD1Q96MW7 591 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 MAP7D2Q96T17 732 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 EIF2AK1Q9BQI3 630 aaKnown RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 ANP32EQ9BTT0 268 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 MMTAG2Q9BU76 263 aaKnown RBP13.44□□□□□ -0.26
PTPRF-208ENST00000437607 TUFT1Q9NNX1 390 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 SPG21Q9NZD8 308 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 TMEM63CQ9P1W3 806 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 HCFC2Q9Y5Z7 792 aa13.44□□□□□ -0.26
PTPRF-208ENST00000437607 C2orf71A6NGG8 1288 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 NT5C1B-RDH14C9J2C7 533 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 EML1O00423 815 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 ACTN4O43707 911 aaKnown RBP13.43□□□□□ -0.26
PTPRF-208ENST00000437607 CLASP2O75122 1294 aaKnown RBP13.43□□□□□ -0.26
PTPRF-208ENST00000437607 SRGAP2BP0DMP2 458 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 RPA1P27694 616 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 TMOD1P28289 359 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 PPM1AP35813 382 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 HYIQ5T013 277 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 KANK3Q6NY19 840 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 POTEGQ6S5H5 508 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 B3GNT9Q6UX72 402 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 ABI1Q8IZP0 508 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 MRPL43Q8N983 215 aaKnown RBP13.43□□□□□ -0.26
PTPRF-208ENST00000437607 RNF169Q8NCN4 708 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 FEZF2Q8TBJ5 459 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 CCDC43Q96MW1 224 aaKnown RBP13.43□□□□□ -0.26
PTPRF-208ENST00000437607 PLIN2Q99541 437 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 LXNQ9BS40 222 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 POLR3CQ9BUI4 534 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-208ENST00000437607 PANK2Q9BZ23 570 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 POMKQ9H5K3 350 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 NRBP2Q9NSY0 501 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 SERTAD1Q9UHV2 236 aa13.43□□□□□ -0.26
PTPRF-208ENST00000437607 TMEM150BA6NC51 233 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 DKC1O60832 514 aaKnown RBP eCLIP13.42□□□□□ -0.261e-7■■■■■ 32
PTPRF-208ENST00000437607 MED24O75448 989 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 EOMESO95936 686 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 SLFN14P0C7P3 912 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 HOXB8P17481 243 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-208ENST00000437607 MUTP22033 750 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 AVPR2P30518 371 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms