RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 LVRNQ6Q4G3 990 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 KIAA1586Q9HCI6 787 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PTK2BQ14289 1009 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 TRIP4Q15650 581 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 CCDC142Q17RM4 750 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 WAPLQ7Z5K2 1190 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 NLRP4Q96MN2 994 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PRRG3Q9BZD7 231 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 RXFP1Q9HBX9 757 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 SAMD9Q5K651 1589 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 KCNQ4P56696 695 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PPARDQ03181 441 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 SPANXN2Q5MJ10 180 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 CCDC137Q6PK04 289 aaKnown RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 BTN2A1Q7KYR7 527 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 RFFLQ8WZ73 363 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 AP1M1Q9BXS5 423 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 DMAP1Q9NPF5 467 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 GINM1Q9NU53 330 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 FAM32AQ9Y421 112 aaKnown RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 OCM2P0CE71 109 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 OCMP0CE72 109 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PPARAQ07869 468 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 ASPRV1Q53RT3 343 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 XAGE2Q96GT9 111 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 MTA3Q9BTC8 594 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 WDR11Q9BZH6 1224 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 EVPLLA8MZ36 301 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 GYS2P54840 703 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PTPN12Q05209 780 aaKnown RBP13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PLEKHA7Q6IQ23 1121 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 L2HGDHQ9H9P8 463 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 CLIC4Q9Y696 253 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 PLEKHG1Q9ULL1 1385 aa13.62□□□□□ -0.23
COL6A3-206ENST00000409809 RXRGP48443 463 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 STX5Q13190 355 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TTLL12Q14166 644 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 NCF4Q15080 339 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 B3GNT6Q6ZMB0 384 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 C19orf18Q8NEA5 215 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 SNX19Q92543 992 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TBXAS1P24557 533 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 MXI1P50539 228 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 STAG2Q8N3U4 1231 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 FAF2Q96CS3 445 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 AURKCQ9UQB9 309 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 ADARP55265 1226 aaKnown RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 DMPKQ09013 629 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 ODR4Q5SWX8 454 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 DCLK2Q8N568 766 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 MAGEB18Q96M61 343 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 NACC1Q96RE7 527 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TEKT3Q9BXF9 490 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 RUBCNLQ9H714 662 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 HPS3Q969F9 1004 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 FHDC1Q9C0D6 1143 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TOM1O60784 492 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TUBA1BP68363 451 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 PKP1Q13835 747 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TUBA1AQ71U36 451 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 MYLK4Q86YV6 388 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 CHURC1Q8WUH1 139 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 RBBP8Q99708 897 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 CORO1CQ9ULV4 474 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 HNRNPDLO14979 420 aaKnown RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TECP42680 631 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 KRT74Q7RTS7 529 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 SPATA5Q8NB90 893 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 ENKURQ8TC29 256 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 S100ZQ8WXG8 99 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 TRPC5OSA6NMA1 111 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 MECOMQ03112 1051 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 CCDC149Q6ZUS6 474 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-206ENST00000409809 DISC1Q9NRI5 854 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 GTSE1Q9NYZ3 720 aa13.61□□□□□ -0.23
COL6A3-206ENST00000409809 HOXB6P17509 224 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 ITKQ08881 620 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 RGS21Q2M5E4 152 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 TPTE2Q6XPS3 522 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 GPR101Q96P66 508 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 BBS2Q9BXC9 721 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 CDYLQ9Y232 598 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 POTEFA5A3E0 1075 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 POTEIP0CG38 1075 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 ZNF827Q17R98 1081 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 SLFN12LQ6IEE8 588 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 POTEEQ6S8J3 1075 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 TMCO1Q9UM00 188 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 DTNAQ9Y4J8 743 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MTTPP55157 894 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MMGT1Q8N4V1 131 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 ANKRD13CQ8N6S4 541 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 DGCR14Q96DF8 476 aaKnown RBP13.6□□□□□ -0.23
COL6A3-206ENST00000409809 DEPDC7Q96QD5 511 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 VPS33BQ9H267 617 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 SH3GLB1Q9Y371 365 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 MYH15Q9Y2K3 1946 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 TMOD1P28289 359 aa13.6□□□□□ -0.23
COL6A3-206ENST00000409809 PEX5P50542 639 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms