RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 STRBPQ96SI9 672 aaKnown RBP6.46□□□□□ -1.38
SCN1A-203ENST00000409050 RBBP8Q99708 897 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ECT2Q9H8V3 914 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 ADAMTS1Q9UHI8 967 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 AP4S1Q9Y587 144 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 CDY2AQ9Y6F7 541 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 CDY1Q9Y6F8 540 aa6.46□□□□□ -1.38
SCN1A-203ENST00000409050 GTPBP10A4D1E9 387 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 O00370 1275 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 KRT14P02533 472 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 HOXC6P09630 235 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CYP2C8P10632 490 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 RXRGP48443 463 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 GPC3P51654 580 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 VAMP7P51809 220 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PSMC5P62195 406 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ATP2C1P98194 919 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CUL3Q13618 768 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SLC10A5Q5PT55 438 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 USP13Q92995 863 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SIKE1Q9BRV8 207 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PSMC3IPQ9P2W1 217 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SNX12Q9UMY4 172 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 AP3M1Q9Y2T2 418 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 USP15Q9Y4E8 981 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 DISP1Q96F81 1524 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 LAMC1P11047 1609 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ARAP3Q8WWN8 1544 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 LOC102724428A0A0B4J2F2 783 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 A0A0G2JND7 137 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SLCO1B7G3V0H7 640 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CLDN3O15551 220 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ADCY3O60266 1144 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 TBC1D4O60343 1298 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CNTFP26441 200 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 GYG1P46976 350 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SIK1P57059 783 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 MAGOHP61326 146 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CYP4A11Q02928 519 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 RUNX1T1Q06455 604 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 TCP10Q12799 353 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF699Q32M78 642 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 DSTYKQ6XUX3 929 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SLC26A7Q8TE54 656 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 NSUN6Q8TEA1 469 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ETNK1Q9HBU6 452 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 RIC8BQ9NVN3 520 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 APPL1Q9UKG1 709 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 FRMD3A2A2Y4 597 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CFLARO15519 480 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 RASSF9O75901 435 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 EYA4O95677 639 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 TRPC1P48995 793 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PRKAA2P54646 552 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 BCAR1P56945 870 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 KCNH2Q12809 1159 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ITIH4Q14624 930 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 ZC3H12BQ5HYM0 836 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 RNF219Q5W0B1 726 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 BTNL9Q6UXG8 535 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CAPN12Q6ZSI9 719 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 RASGRP2Q7LDG7 609 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PPHLN1Q8NEY8 458 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 URGCPQ8TCY9 931 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 NAT9Q9BTE0 207 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 STK33Q9BYT3 514 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 INTS2Q9H0H0 1204 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SCN3BQ9NY72 215 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PAK5Q9P286 719 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PPME1Q9Y570 386 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 TRPC5OSA6NMA1 111 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 M0R2C6 588 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PSMD14O00487 310 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 EIF3HO15372 352 aaKnown RBP eCLIP6.45□□□□□ -1.382e-7■■■■□ 19.6
SCN1A-203ENST00000409050 MAFGO15525 162 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 GAS2O43903 313 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 EIF2S1P05198 315 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 HOXB6P17509 224 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 GGCXP38435 758 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 HSD17B4P51659 736 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 PTPN12Q05209 780 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 TRIM28Q13263 835 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 CYTH1Q15438 398 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 FAM196AQ6ZSG2 479 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 COL23A1Q86Y22 540 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SUGP1Q8IWZ8 645 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 GPD1LQ8N335 351 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 UHMK1Q8TAS1 419 aaKnown RBP6.45□□□□□ -1.38
SCN1A-203ENST00000409050 OLFM1Q99784 485 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 SYBUQ9NX95 663 aa6.45□□□□□ -1.38
SCN1A-203ENST00000409050 APOL1O14791 398 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ZNF263O14978 683 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 SERPINI2O75830 405 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CYP2E1P05181 493 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 QARSP47897 775 aaKnown RBP6.44□□□□□ -1.38
SCN1A-203ENST00000409050 FNTAP49354 379 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 CCDC15Q0P6D6 951 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 COASYQ13057 564 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 HIF1AQ16665 826 aa6.44□□□□□ -1.38
SCN1A-203ENST00000409050 ADCK5Q3MIX3 580 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms