RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 METAP2P50579 478 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 WTAPQ15007 396 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 SEC23AQ15436 765 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 FSCN1Q16658 493 aaKnown RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 FAM83BQ5T0W9 1011 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 LARP1BQ659C4 914 aaKnown RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 SEZ6L2Q6UXD5 910 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 C16orf86Q6ZW13 317 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF765Q7L2R6 523 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 DEFB128Q7Z7B8 93 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 CCDC74AQ96AQ1 378 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 TCEANC2Q96MN5 208 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 CITED4Q96RK1 184 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 SLF1Q9BQI6 1058 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 C1GALT1Q9NS00 363 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 RBM28Q9NW13 759 aaKnown RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 ZSWIM5Q9P217 1185 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 SYNPO2Q9UMS6 1093 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 MTMR6Q9Y217 621 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 GNEQ9Y223 722 aaKnown RBP7.95□□□□□ -1.14
VPS13A-201ENST00000355766 ZDHHC9Q9Y397 364 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 RIPK3Q9Y572 518 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 CACNA1AO00555 2505 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 SMCHD1A6NHR9 2005 aa7.95□□□□□ -1.14
VPS13A-201ENST00000355766 BAZ2AQ9UIF9 1905 aaKnown RBP7.94□□□□□ -1.14
VPS13A-201ENST00000355766 PTPDC1A2A3K4 754 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 CCDC69A6NI79 296 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 EIF1AYO14602 144 aaKnown RBP7.94□□□□□ -1.14
VPS13A-201ENST00000355766 IFIT3O14879 490 aaKnown RBP7.94□□□□□ -1.14
VPS13A-201ENST00000355766 ATP2A1O14983 1001 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 GPR182O15218 404 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 ZEB2O60315 1214 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 BAIAP3O94812 1187 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 SUPT20HL2P0C7V6 817 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 CYP2C9P11712 490 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 EEF2P13639 858 aaKnown RBP7.94□□□□□ -1.14
VPS13A-201ENST00000355766 IFNAR1P17181 557 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 KCNA5P22460 613 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 NOVP48745 357 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 PSMC6P62333 389 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 TNFAIP2Q03169 654 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 APOBRQ0VD83 1088 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 COL19A1Q14993 1142 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 KLHL40Q2TBA0 621 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 NOL8Q76FK4 1167 aaKnown RBP7.94□□□□□ -1.14
VPS13A-201ENST00000355766 CYB5R4Q7L1T6 521 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 TP53INP2Q8IXH6 220 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 CCDC144CPQ8IYA2 1237 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 FAM184AQ8NB25 1140 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 DYNLL2Q96FJ2 89 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 CCDC17Q96LX7 622 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 NIF3L1Q9GZT8 377 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 LRRC4CQ9HCJ2 640 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 ZC3H7BQ9UGR2 993 aaKnown RBP7.94□□□□□ -1.14
VPS13A-201ENST00000355766 FBXO40Q9UH90 709 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 WDFY4Q6ZS81 3184 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 TNKSO95271 1327 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 TANC1Q9C0D5 1861 aa7.94□□□□□ -1.14
VPS13A-201ENST00000355766 TMEM238LA0A1B0GVL6 79 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 LCHNA4D1U4 455 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 MINDY4BA8MYZ0 360 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 KIF5BP33176 963 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 GNAQP50148 359 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 CYP27A1Q02318 531 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 AP3B2Q13367 1082 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 PKP1Q13835 747 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 CBLL1Q75N03 491 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 BRAPQ7Z569 592 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 CATIPQ7Z7H3 387 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 ANKRD35Q8N283 1001 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 ENAHQ8N8S7 591 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-201ENST00000355766 NECAB1Q8N987 351 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 RNF26Q9BY78 433 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-201ENST00000355766 SCAND2PQ9GZW5 306 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-201ENST00000355766 AP5M1Q9H0R1 490 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 DNAJC25Q9H1X3 360 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 KANSL2Q9H9L4 492 aa7.93□□□□□ -1.14
VPS13A-201ENST00000355766 TRMT13Q9NUP7 481 aaKnown RBP7.93□□□□□ -1.14
VPS13A-201ENST00000355766 USP34Q70CQ2 3546 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 TSPY2A6NKD2 308 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 GOLGA8AA7E2F4 631 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 H3BQV1 296 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 GADD45BO75293 160 aaPredicted RBP7.92□□□□□ -1.14
VPS13A-201ENST00000355766 CTDNEP1O95476 244 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 PTGS1P23219 599 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 SMARCA1P28370 1054 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 KCNJ6P48051 423 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 CDK8P49336 464 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 KRT85P78386 507 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 CNTN2Q02246 1040 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 ZP2Q05996 745 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 NTRK3Q16288 839 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 IFIT1BQ5T764 474 aaKnown RBP7.92□□□□□ -1.14
VPS13A-201ENST00000355766 TEX2Q8IWB9 1127 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 ZNF654Q8IZM8 581 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 CPXCR1Q8N123 301 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 FAM133AQ8N9E0 248 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 CHST13Q8NET6 341 aa7.92□□□□□ -1.14
VPS13A-201ENST00000355766 PRSS33Q8NF86 280 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms