RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 MB21D1Q8N884 522 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 RHOBTB2Q9BYZ6 727 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 FHOD1Q9Y613 1164 aa13.33□□□□□ -0.28
COL6A3-203ENST00000353578 ARHGEF37A1IGU5 675 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 MATN2O00339 956 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ATP4AP20648 1035 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 GYS2P54840 703 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 NFRKBQ6P4R8 1299 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ZNF654Q8IZM8 581 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 DLG3Q92796 817 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 BLZF1Q9H2G9 400 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 EYA2O00167 538 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PRLRP16471 622 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 IFRD2Q12894 506 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-203ENST00000353578 TFDP2Q14188 446 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 DGUOKQ16854 277 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 TCHHL1Q5QJ38 904 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-203ENST00000353578 RFX6Q8HWS3 928 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.32□□□□□ -0.28
COL6A3-203ENST00000353578 CACNA2D2Q9NY47 1150 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ARHGEF11O15085 1522 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 SSU72P8A0A1W2PR75 194 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 STX5Q13190 355 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PM20D2Q8IYS1 436 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 SCFD1Q8WVM8 642 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 MAP4K1Q92918 833 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 LDHBP07195 334 aaKnown RBP13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PTPREP23469 700 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PEX5P50542 639 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PTGDRQ13258 359 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 STAMQ92783 540 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 RMND5BQ96G75 393 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-203ENST00000353578 DCTN4Q9UJW0 460 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PJA2O43164 708 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 TFCP2Q12800 502 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 STAG2Q8N3U4 1231 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 SVOPQ8N4V2 548 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ISCUQ9H1K1 167 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 CDHR2Q9BYE9 1310 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 GAS7O60861 476 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PTPN4P29074 926 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PRMT9Q6P2P2 845 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 AFAP1Q8N556 730 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 MINDY2Q8NBR6 621 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 C19orf18Q8NEA5 215 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 SHCBP1Q8NEM2 672 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ZBTB9Q96C00 473 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 PRRG3Q9BZD7 231 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 B4E1Z4 1266 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ENOSF1Q7L5Y1 443 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 CAVIN3Q969G5 261 aa13.32□□□□□ -0.28
COL6A3-203ENST00000353578 ZSCAN10Q96SZ4 725 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-203ENST00000353578 URB2Q14146 1524 aaKnown RBP13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PMLP29590 882 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 GSTT1P30711 240 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 CXCR5P32302 372 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 MTHFD1LQ6UB35 978 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 LPCAT2Q7L5N7 544 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SSH3Q8TE77 659 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SAR1AQ9NR31 198 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 POTEMA6NI47 508 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 TRPC5OSA6NMA1 111 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 POTEHQ6S545 545 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 POTEGQ6S5H5 508 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 CYFIP1Q7L576 1253 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 DNAAF3Q8N9W5 541 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 HIPK4Q8NE63 616 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PARD3BQ8TEW8 1205 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 RFFLQ8WZ73 363 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 MRPL48Q96GC5 212 aaKnown RBP13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PSTPIP1O43586 416 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SKIV2L2P42285 1042 aaKnown RBP13.31□□□□□ -0.28
COL6A3-203ENST00000353578 CYP4A11Q02928 519 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 CYP4A22Q5TCH4 519 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PPM1KQ8N3J5 372 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PCDHA12Q9UN75 941 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 TOPBP1Q92547 1522 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PIK3CAP42336 1068 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 PARVAQ9NVD7 372 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SEL1LQ9UBV2 794 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 YWHAHQ04917 246 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-203ENST00000353578 CCDC149Q6ZUS6 474 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 CCDC33Q8N5R6 958 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SYN2Q92777 582 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-203ENST00000353578 NLRP4Q96MN2 994 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SORCS3Q9UPU3 1222 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 IL12AP29459 219 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 BRDTQ58F21 947 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-203ENST00000353578 TM9SF1O15321 606 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 NCF4Q15080 339 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 ARL13BQ3SXY8 428 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 SCUBE1Q8IWY4 988 aa13.31□□□□□ -0.28
COL6A3-203ENST00000353578 AKAP10O43572 662 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 WFS1O76024 890 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 CDH3P22223 829 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 FUT8Q9BYC5 575 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 EIF4G3O43432 1585 aaKnown RBP13.3□□□□□ -0.28
COL6A3-203ENST00000353578 PTCH1Q13635 1447 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 LRRIQ1Q96JM4 1722 aa13.3□□□□□ -0.28
COL6A3-203ENST00000353578 MBD4O95243 580 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms