RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 PCDHA6Q9UN73 950 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 PCDHA8Q9Y5H6 950 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 MIF4GDA9UHW6 222 aaKnown RBP19.81■□□□□ 0.76
SMPD1-201ENST00000342245 HNRNPRO43390 633 aaKnown RBP19.81■□□□□ 0.76
SMPD1-201ENST00000342245 RAD21O60216 631 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 TMEM253P0C7T8 217 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 CBX3Q13185 183 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 WDR72Q3MJ13 1102 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 DCAF12L1Q5VU92 463 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 SEPT14Q6ZU15 432 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 RIBC1Q8N443 379 aaPredicted RBP19.81■□□□□ 0.76
SMPD1-201ENST00000342245 CDC42EP4Q9H3Q1 356 aaKnown RBP19.81■□□□□ 0.76
SMPD1-201ENST00000342245 MLXIPLQ9NP71 852 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 UBN1Q9NPG3 1134 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 RHBDL2Q9NX52 303 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 DNAJB4Q9UDY4 337 aa19.81■□□□□ 0.76
SMPD1-201ENST00000342245 FAM47DPA6NHR8 397 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 E2F6O75461 281 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 FGRP09769 529 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 UBTFL6P0CB48 400 aaPredicted RBP19.8■□□□□ 0.76
SMPD1-201ENST00000342245 IDO1P14902 403 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 DSG1Q02413 1049 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 PPATQ06203 517 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 MPP2Q14168 576 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 ZC2HC1CQ53FD0 456 aaPredicted RBP19.8■□□□□ 0.76
SMPD1-201ENST00000342245 SPATA24Q86W54 205 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 LARP4BQ92615 738 aaKnown RBP19.8■□□□□ 0.76
SMPD1-201ENST00000342245 PPP2R3CQ969Q6 453 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 CDH16O75309 829 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 TBX10O75333 385 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 VAV1P15498 845 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 CREB1P16220 341 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 FOXN2P32314 431 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 RGS2P41220 211 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 PHEXP78562 749 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 R3HDM1Q15032 1099 aaKnown RBP19.8■□□□□ 0.76
SMPD1-201ENST00000342245 INF2Q27J81 1249 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 CCDC77Q9BR77 488 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 STK32BQ9NY57 414 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 PTTG2Q9NZH5 202 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 MYH3P11055 1940 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 GLI3P10071 1580 aa19.8■□□□□ 0.76
SMPD1-201ENST00000342245 COL18A1P39060 1754 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 C2CD2LO14523 706 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 LGR5O75473 907 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 KRT36O76013 467 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 ZFXP17010 805 aaPredicted RBP19.79■□□□□ 0.76
SMPD1-201ENST00000342245 VCAM1P19320 739 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 MUTP22033 750 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 ACSBG2Q5FVE4 666 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 ZNF554Q86TJ5 538 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 UBL4BQ8N7F7 174 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 PIP4K2CQ8TBX8 421 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 C10orf82Q8WW14 230 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 HAUS1Q96CS2 278 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 CADM1Q9BY67 442 aaKnown RBP19.79■□□□□ 0.76
SMPD1-201ENST00000342245 WHRNQ9P202 907 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 HSFX1Q9UBD0 423 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 WNK3Q9BYP7 1800 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 ANKRD36CQ5JPF3 1778 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 PIM1P11309 404 aaPredicted RBP19.79■□□□□ 0.76
SMPD1-201ENST00000342245 UCHL3P15374 230 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 LMNB1P20700 586 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 PUM3Q15397 648 aaKnown RBP19.79■□□□□ 0.76
SMPD1-201ENST00000342245 USH1GQ495M9 461 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 TAF1BQ53T94 588 aaPredicted RBP19.79■□□□□ 0.76
SMPD1-201ENST00000342245 FAM47EQ6ZV65 393 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 EPM2AIP1Q7L775 607 aaPredicted RBP19.79■□□□□ 0.76
SMPD1-201ENST00000342245 PHLDB2Q86SQ0 1253 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 C18orf8Q96DM3 657 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 CRAMP1Q96RY5 1269 aa19.79■□□□□ 0.76
SMPD1-201ENST00000342245 PCDH11YQ9BZA8 1340 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 F8W8V4 182 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 EDF1O60869 148 aaKnown RBP19.78■□□□□ 0.76
SMPD1-201ENST00000342245 CBX6O95503 412 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 HPCAP84074 193 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 SPARCL1Q14515 664 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 CYP1B1Q16678 543 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 CCDC137Q6PK04 289 aaKnown RBP19.78■□□□□ 0.76
SMPD1-201ENST00000342245 PPP4R3CPQ6ZMV5 832 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 CCDC125Q86Z20 511 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 WDR60Q8WVS4 1066 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 SLC35B4Q969S0 331 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 CDK5RAP3Q96JB5 506 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 KRT82Q9NSB4 513 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 TUBGCP4Q9UGJ1 667 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 MTUS1Q9ULD2 1270 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 PPP1R9AQ9ULJ8 1098 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 SH3GLB1Q9Y371 365 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ADAMTS3O15072 1205 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ZNF189O75820 626 aaPredicted RBP19.78■□□□□ 0.76
SMPD1-201ENST00000342245 TTC4O95801 387 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ZCCHC18P0CG32 403 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 GALCP54803 685 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ZC3H3Q8IXZ2 948 aaKnown RBP19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ALDH16A1Q8IZ83 802 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 RSPH1Q8WYR4 309 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 TUBGCP5Q96RT8 1024 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ZBTB3Q9H5J0 574 aa19.78■□□□□ 0.76
SMPD1-201ENST00000342245 ETNK2Q9NVF9 386 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms