RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YIL002W-A	Q3E7Z5	69 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	SEY1	Q99287	776 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	DET1	Q99288	334 aa	Known RBP	4.13	□□□□□ -1.75
CAF16	YFL028C	FMP27	Q06179	2628 aa		4.13	□□□□□ -1.75
CAF16	YFL028C	QCR6	P00127	147 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	RPL18A	P0CX49	186 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	RPL18B	P0CX50	186 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	FPR1	P20081	114 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	FAR1	P21268	830 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	UTR1	P21373	530 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	DAL81	P21657	970 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	AAT2	P23542	418 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	MGT1	P26188	188 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	UBC6	P33296	250 aa	Predicted RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	SDH3	P33421	198 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
CAF16	YFL028C	ECM8	P38246	354 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	KRE9	P39005	276 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	SCC4	P40090	624 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	YJR030C	P47101	745 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	AIM24	P47127	394 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	PNC1	P53184	216 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	LST7	P53237	242 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	TIM13	P53299	105 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	DBP6	P53734	629 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	CWC25	P53854	179 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	EGD1	Q02642	157 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	TDA1	Q03533	586 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	ENT5	Q03769	411 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	RRN11	Q04712	507 aa		4.12	□□□□□ -1.75
CAF16	YFL028C	RIO1	Q12196	484 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	RRP36	Q12481	300 aa	Predicted RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	HTZ1	Q12692	134 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	MEX67	Q99257	599 aa	Known RBP	4.12	□□□□□ -1.75
CAF16	YFL028C	MSF1	P08425	469 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	CBF1	P17106	351 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	RPO26	P20435	155 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	POP5	P28005	173 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	TPS2	P31688	896 aa	Known RBP	4.11	□□□□□ -1.75
CAF16	YFL028C	IML3	P38265	245 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	RBG1	P39729	369 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	MAM33	P40513	266 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	AIM23	P47015	356 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	FLC3	P53121	802 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	VOA1	P53262	265 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	MTQ1	P53944	314 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	CMS1	Q07897	291 aa	Known RBP	4.11	□□□□□ -1.75
CAF16	YFL028C	PER33	Q12144	273 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	PEX11	Q12462	236 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	PCL9	Q12477	304 aa		4.11	□□□□□ -1.75
CAF16	YFL028C	CDC8	P00572	216 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	RAD1	P06777	1100 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	RPS8A	P0CX39	200 aa	Known RBP	4.1	□□□□□ -1.75
CAF16	YFL028C	RPS8B	P0CX40	200 aa	Known RBP	4.1	□□□□□ -1.75
CAF16	YFL028C	IST2	P38250	946 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	SMF2	P38778	549 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	PTH1	P38876	190 aa	Known RBP	4.1	□□□□□ -1.75
CAF16	YFL028C	PAN6	P40459	309 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	MIC19	P43594	170 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	KEG1	P43614	200 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	NAS6	P50086	228 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	YGR168C	P53293	376 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	CLP1	Q08685	445 aa	Predicted RBP	4.1	□□□□□ -1.75
CAF16	YFL028C	YGK3	Q12222	375 aa	Predicted RBP	4.1	□□□□□ -1.75
CAF16	YFL028C	PAA1	Q12447	191 aa	Known RBP	4.1	□□□□□ -1.75
CAF16	YFL028C	YMR230W-A	Q3E7B5	62 aa		4.1	□□□□□ -1.75
CAF16	YFL028C	CMD1	P06787	147 aa	Known RBP	4.09	□□□□□ -1.75
CAF16	YFL028C	RBK1	P25332	333 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	YBL059W	P34224	193 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	PEX32	P38292	413 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	YPT35	P38815	214 aa	Known RBP	4.09	□□□□□ -1.75
CAF16	YFL028C	SER33	P40510	469 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	INA22	P40576	216 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	HAC1	P41546	238 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	YFL012W	P43580	148 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	BUD13	P46947	266 aa	Predicted RBP	4.09	□□□□□ -1.75
CAF16	YFL028C	CTK3	P46963	296 aa	Predicted RBP	4.09	□□□□□ -1.75
CAF16	YFL028C	YJR085C	P47131	105 aa	Known RBP	4.09	□□□□□ -1.75
CAF16	YFL028C	EMC4	P53073	190 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	CDC14	Q00684	551 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	YPR114W	Q06107	315 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	LDB18	Q07887	179 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	SLD7	Q08457	257 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	TMS1	Q12116	473 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	LDB17	Q12342	491 aa		4.09	□□□□□ -1.75
CAF16	YFL028C	DCP1	Q12517	231 aa	Predicted RBP	4.09	□□□□□ -1.75
CAF16	YFL028C	HHF1	P02309	103 aa	Known RBP	4.08	□□□□□ -1.76
CAF16	YFL028C	CAR2	P07991	424 aa	Known RBP	4.08	□□□□□ -1.76
CAF16	YFL028C	UGA1	P17649	471 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	SAR1	P20606	190 aa	Known RBP	4.08	□□□□□ -1.76
CAF16	YFL028C	DCC1	P25559	380 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	DEG1	P31115	442 aa	Known RBP	4.08	□□□□□ -1.76
CAF16	YFL028C	VMA5	P31412	392 aa	Known RBP	4.08	□□□□□ -1.76
CAF16	YFL028C	AEP1	P32493	518 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	GCD14	P46959	383 aa	Predicted RBP	4.08	□□□□□ -1.76
CAF16	YFL028C	VAC7	P53950	1165 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
CAF16	YFL028C	YMR010W	Q03687	405 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	YMR027W	Q04371	470 aa		4.08	□□□□□ -1.76
CAF16	YFL028C	YMR111C	Q04461	462 aa	Predicted RBP	4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 25 ms