RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TBC1D10AQ9BXI6 508 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ANLNQ9NQW6 1124 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 INIPQ9NRY2 104 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ATP6V1HQ9UI12 483 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PLA2R1Q13018 1463 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ZSCAN5BA6NJL1 495 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 GIPC1O14908 333 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 BUB1O43683 1085 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 IDH3BO43837 385 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PPP6R2O75170 966 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 BAIAP3O94812 1187 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SHBGP04278 402 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PGM1P36871 562 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ETV3P41162 512 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 CHN2P52757 468 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 THOP1P52888 689 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 MRPL28Q13084 256 aaKnown RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 CAMK2BQ13554 666 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 C1orf146Q5VVC0 180 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 TYW1BQ6NUM6 668 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 KIF6Q6ZMV9 814 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 PRR23CQ6ZRP0 262 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 CYP4V2Q6ZWL3 525 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SATL1Q86VE3 508 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SFR1Q86XK3 245 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 FAM20CQ8IXL6 584 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 OR7G1Q8NGA0 311 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 MED30Q96HR3 178 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 ECSITQ9BQ95 431 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 RTFDC1Q9BY42 306 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-216ENST00000637968 TANGO6Q9C0B7 1094 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 BCAP29Q9UHQ4 241 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 SERTAD1Q9UHV2 236 aa6.11□□□□□ -1.43
SCN1A-216ENST00000637968 A8MXQ7 604 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 F8W031 263 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 SERPINB7O75635 380 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CHRNB1P11230 501 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 KRT13P13646 458 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 STMN1P16949 149 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ST13P50502 369 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 DNM2P50570 870 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 OLR1P78380 273 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CALCOCO2Q13137 446 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ACAD11Q709F0 780 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 AACSQ86V21 672 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 SNX32Q86XE0 403 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 GATAD2AQ86YP4 633 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 TMEM237Q96Q45 408 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 PYM1Q9BRP8 204 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 SLC38A10Q9HBR0 1119 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ADD3Q9UEY8 706 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MAD1L1Q9Y6D9 718 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 DUOX2Q9NRD8 1548 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 E9PBE3 544 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CCDC188H7C350 402 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 FBXO21O94952 628 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CSPG5O95196 566 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 KCNA6P17658 529 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 STX1BP61266 288 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 DNAJC3Q13217 504 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 E2F2Q14209 437 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 RNF43Q68DV7 783 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ARHGAP27Q6ZUM4 889 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MIGA2Q7L4E1 593 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 LPCAT2Q7L5N7 544 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 VPS37DQ86XT2 251 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 COL23A1Q86Y22 540 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 ANKMY2Q8IV38 441 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 BBS5Q8N3I7 341 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 EIF1ADQ8N9N8 165 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 OSBPL6Q9BZF3 934 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 C14orf93Q9H972 538 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MOV10Q9HCE1 1003 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 PCDHA13Q9Y5I0 950 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 GOLGA8MH3BSY2 632 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 XPO1O14980 1071 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 KRT36O76013 467 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 PPP1R2P41236 205 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 OCA2Q04671 838 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 FLIIQ13045 1269 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MORC3Q14149 939 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 KRT24Q2M2I5 525 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 NIPAL1Q6NVV3 410 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 PPP1R2P3Q6NXS1 205 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 PEX26Q7Z412 305 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CREG2Q8IUH2 290 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CCDC82Q8N4S0 544 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 C8orf58Q8NAV2 365 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 SUPT20HQ8NEM7 779 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 WASF1Q92558 559 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 HPS1Q92902 700 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 PSKH2Q96QS6 385 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 GRIP2Q9C0E4 1043 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 RNF38Q9H0F5 515 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 INTS13Q9NVM9 706 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 CNOT8Q9UFF9 292 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MKL2Q9ULH7 1088 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 APOBEC2Q9Y235 224 aaKnown RBP6.1□□□□□ -1.43
SCN1A-216ENST00000637968 MAP3K13O43283 966 aa6.1□□□□□ -1.43
SCN1A-216ENST00000637968 EEF1DP29692 281 aaKnown RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms