RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 LARSQ9P2J5 1176 aaKnown RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 SLC12A6Q9UHW9 1150 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 hCG_2014768A0A024R1R8 64 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 ASAP2O43150 1006 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 HSPA1LP34931 641 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 FXR2P51116 673 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLN3-244ENST00000636147 ARHGAP4P98171 946 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 SBK1Q52WX2 424 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 RBM26Q5T8P6 1007 aaKnown RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 LIN9Q5TKA1 542 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 USP37Q86T82 979 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 SERPINB13Q9UIV8 391 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 FOXN3O00409 490 aaPredicted RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 CYP26A1O43174 497 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 SNX3O60493 162 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 AKR1B1P15121 316 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 PTENP60484 403 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 WDR44Q5JSH3 913 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 FBXO41Q8TF61 875 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 MAML1Q92585 1016 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 TTC17Q96AE7 1141 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 EHMT1Q9H9B1 1298 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 UBN1Q9NPG3 1134 aa11.81□□□□□ -0.52
CLN3-244ENST00000636147 ZBTB12Q9Y330 459 aaPredicted RBP11.81□□□□□ -0.52
CLN3-244ENST00000636147 ABCB11O95342 1321 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 SGK1O00141 431 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 PDXKO00764 312 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 MAP3K7O43318 606 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 NSFP46459 744 aaKnown RBP11.8□□□□□ -0.52
CLN3-244ENST00000636147 FMO5P49326 533 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 BFSP1Q12934 665 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 EDRF1Q3B7T1 1238 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 C2CD6Q53TS8 623 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 CCDC89Q8N998 374 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 CNBD1Q8NA66 436 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 PARD3BQ8TEW8 1205 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 KRT35Q92764 455 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 ARHGEF26Q96DR7 871 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 STK33Q9BYT3 514 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 EMSYQ7Z589 1322 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 TMEM253P0C7T8 217 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 TNNI1P19237 187 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 PSMC6P62333 389 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 OVGP1Q12889 678 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 LRRC36Q1X8D7 754 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 EPC2Q52LR7 807 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 LRRC23Q53EV4 343 aaPredicted RBP11.8□□□□□ -0.52
CLN3-244ENST00000636147 GPATCH4Q5T3I0 446 aaKnown RBP11.8□□□□□ -0.52
CLN3-244ENST00000636147 CFAP57Q96MR6 1250 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 POP1Q99575 1024 aaKnown RBP11.8□□□□□ -0.52
CLN3-244ENST00000636147 I3L4J1 428 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 MED24O75448 989 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 NOL4O94818 638 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 CASP5P51878 434 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 RNASELQ05823 741 aaKnown RBP11.8□□□□□ -0.52
CLN3-244ENST00000636147 KCNA1Q09470 495 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 BBS9Q3SYG4 887 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 DAGLBQ8NCG7 672 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 MXD3Q9BW11 206 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 AMNQ9BXJ7 453 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 KLHL11Q9NVR0 708 aa11.8□□□□□ -0.52
CLN3-244ENST00000636147 ZBTB5O15062 677 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 CDH16O75309 829 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 UBTFL6P0CB48 400 aaPredicted RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 COILP38432 576 aaPredicted RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 CPA2P48052 419 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 ITGA8P53708 1063 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 CACNB3P54284 484 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 IRX4P78413 519 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 QRICH1Q2TAL8 776 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 MDH1BQ5I0G3 518 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 IZUMO3Q5VZ72 239 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 PASD1Q8IV76 773 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 SYT2Q8N9I0 419 aaPredicted RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 SLC20A1Q8WUM9 679 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 PAPOLBQ9NRJ5 636 aaKnown RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 SLAIN2Q9P270 581 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 CHD2O14647 1828 aaKnown RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 PITPNM2Q9BZ72 1349 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 RARGP13631 454 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 MARCKSL1P49006 195 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 TBC1D9BQ66K14 1250 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 CPXCR1Q8N123 301 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 LRRC15Q8TF66 581 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 FGD4Q96M96 766 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 FAM161BQ96MY7 647 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 TRABDQ9H4I3 376 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 NVLO15381 856 aaKnown RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 RIPK2O43353 540 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 LGR5O75473 907 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 GAP43P17677 238 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 FAM102BQ5T8I3 360 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.79□□□□□ -0.52
CLN3-244ENST00000636147 CATSPER3Q86XQ3 398 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 SNF8Q96H20 258 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 NT5C1BQ96P26 610 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 TAS2R14Q9NYV8 317 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 APEX2Q9UBZ4 518 aa11.79□□□□□ -0.52
CLN3-244ENST00000636147 G3BP2Q9UN86 482 aaKnown RBP11.79□□□□□ -0.52
CLN3-244ENST00000636147 PIK3C2AO00443 1686 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms