RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 CEP89Q96ST8 783 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 TMEM117Q9H0C3 514 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 ZNF408Q9H9D4 720 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 ARHGAP28Q9P2N2 729 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 DDX3XO00571 662 aaKnown RBP eCLIP21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 NEDD9Q14511 834 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 ALKBH5Q6P6C2 394 aaKnown RBP21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 ASAP3Q8TDY4 903 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 POMGNT1Q8WZA1 660 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 PSMB7Q99436 277 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 MMP19Q99542 508 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 POP1Q99575 1024 aaKnown RBP21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 DHX33Q9H6R0 707 aaKnown RBP21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 NENFQ9UMX5 172 aa21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 ZNFX1Q9P2E3 1918 aaKnown RBP21.34■■□□□ 1.01
CHRNA4-209ENST00000627000 SCN4AP35499 1836 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 RHOXF2BP0C7M4 288 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 CYP2C8P10632 490 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 GPR162Q16538 588 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 NFRKBQ6P4R8 1299 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 LNX1Q8TBB1 728 aaPredicted RBP21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 COG1Q8WTW3 980 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 RHOXF2Q9BQY4 288 aa21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 ARGLU1Q9NWB6 273 aaPredicted RBP21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 DDX41Q9UJV9 622 aaKnown RBP21.33■■□□□ 1.01
CHRNA4-209ENST00000627000 DNAJC25-GNG10A0A024R161 153 aa21.33■■□□□ 1
CHRNA4-209ENST00000627000 HNRNPDLO14979 420 aaKnown RBP21.33■■□□□ 1
CHRNA4-209ENST00000627000 SEC31AO94979 1220 aaKnown RBP21.33■■□□□ 1
CHRNA4-209ENST00000627000 TCF7P36402 384 aaPredicted RBP21.33■■□□□ 1
CHRNA4-209ENST00000627000 KCTD2Q14681 263 aa21.33■■□□□ 1
CHRNA4-209ENST00000627000 PNKPQ96T60 521 aa21.33■■□□□ 1
CHRNA4-209ENST00000627000 NIFKQ9BYG3 293 aaKnown RBP21.33■■□□□ 1
CHRNA4-209ENST00000627000 UBE2TQ9NPD8 197 aaPredicted RBP21.33■■□□□ 1
CHRNA4-209ENST00000627000 FOXN3O00409 490 aaPredicted RBP21.32■■□□□ 1
CHRNA4-209ENST00000627000 N4BP1O75113 896 aaKnown RBP21.32■■□□□ 1
CHRNA4-209ENST00000627000 PALMO75781 387 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 GLRA2P23416 452 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 MXI1P50539 228 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 STAT5BP51692 787 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 MAP2K1Q02750 393 aaPredicted RBP21.32■■□□□ 1
CHRNA4-209ENST00000627000 PARD3BQ8TEW8 1205 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 SLC10A4Q96EP9 437 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 BICD1Q96G01 975 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 TLR10Q9BXR5 811 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 PORCNQ9H237 461 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 TOPORSQ9NS56 1045 aaPredicted RBP21.32■■□□□ 1
CHRNA4-209ENST00000627000 CLEC11AQ9Y240 323 aa21.32■■□□□ 1
CHRNA4-209ENST00000627000 LRRIQ3A6PVS8 624 aaPredicted RBP21.31■■□□□ 1
CHRNA4-209ENST00000627000 P4HA2O15460 535 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 TGFB3P10600 412 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 CXCR5P32302 372 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 SNAPC2Q13487 334 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 TMEM63BQ5T3F8 832 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 MAP1SQ66K74 1059 aaPredicted RBP21.31■■□□□ 1
CHRNA4-209ENST00000627000 METTL7BQ6UX53 244 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 U2AF1L4Q8WU68 220 aaKnown RBP21.31■■□□□ 1
CHRNA4-209ENST00000627000 FBXL18Q96ME1 805 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 ERVK-9P63128 1117 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 CETN1Q12798 172 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 BRDTQ58F21 947 aaPredicted RBP21.31■■□□□ 1
CHRNA4-209ENST00000627000 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.31■■□□□ 1
CHRNA4-209ENST00000627000 CREG2Q8IUH2 290 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 GLYCTKQ8IVS8 523 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 FBXO16Q8IX29 292 aaPredicted RBP21.31■■□□□ 1
CHRNA4-209ENST00000627000 MSANTD4Q8NCY6 345 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 CAGE1Q8TC20 777 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 SEPT1Q8WYJ6 367 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 SEMA4DQ92854 862 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 KAT5Q92993 513 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 OSBPL9Q96SU4 736 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 EFCC1Q9HA90 598 aa21.31■■□□□ 1
CHRNA4-209ENST00000627000 FAM170AA1A519 330 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 FTCDO95954 541 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 ARL2P36404 184 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 MCCD1P59942 119 aaPredicted RBP21.3■■□□□ 1
CHRNA4-209ENST00000627000 MKRN3Q13064 507 aaKnown RBP21.3■■□□□ 1
CHRNA4-209ENST00000627000 BMS1Q14692 1282 aaKnown RBP21.3■■□□□ 1
CHRNA4-209ENST00000627000 TARBP2Q15633 366 aaKnown RBP21.3■■□□□ 1
CHRNA4-209ENST00000627000 HSDL1Q3SXM5 330 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 C10orf76Q5T2E6 689 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 TMCO3Q6UWJ1 677 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 VPS36Q86VN1 386 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 TRIM50Q86XT4 487 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 SLC30A5Q8TAD4 765 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 SLC7A3Q8WY07 619 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 FAM84AQ96KN4 292 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 MFSD14AQ96MC6 490 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 SYT11Q9BT88 431 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 RNF216Q9NWF9 866 aaPredicted RBP21.3■■□□□ 1
CHRNA4-209ENST00000627000 IQCA1LA6NCM1 817 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 LRRIQ4A6NIV6 560 aa21.3■■□□□ 1
CHRNA4-209ENST00000627000 GRID2IPA4D2P6 1211 aa21.29■■□□□ 1
CHRNA4-209ENST00000627000 ZRANB2O95218 330 aaKnown RBP eCLIP21.29■■□□□ 1
CHRNA4-209ENST00000627000 ANXA13P27216 316 aa21.29■■□□□ 1
CHRNA4-209ENST00000627000 MARK3P27448 753 aa21.29■■□□□ 1
CHRNA4-209ENST00000627000 COPB2P35606 906 aa21.29■■□□□ 1
CHRNA4-209ENST00000627000 CBX1P83916 185 aa21.29■■□□□ 1
CHRNA4-209ENST00000627000 CKAP4Q07065 602 aaKnown RBP21.29■■□□□ 1
CHRNA4-209ENST00000627000 CYP24A1Q07973 514 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms