RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SFNP31947 248 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SMTNP53814 917 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 PRKCEQ02156 737 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 PPM1KQ8N3J5 372 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 MMGT1Q8N4V1 131 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 IFT81Q8WYA0 676 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 POMGNT1Q8WZA1 660 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SEMA4DQ92854 862 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 THAP2Q9H0W7 228 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SLC9A2Q9UBY0 812 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SSC5DA1L4H1 1573 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 TARSL2A2RTX5 802 aaKnown RBP11.52□□□□□ -0.57
CUX1-221ENST00000622516 SLC39A4Q6P5W5 647 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SND1Q7KZF4 910 aaKnown RBP eCLIP11.52□□□□□ -0.57
CUX1-221ENST00000622516 ADAT2Q7Z6V5 191 aaKnown RBP11.52□□□□□ -0.57
CUX1-221ENST00000622516 LRRC57Q8N9N7 239 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SLC30A5Q8TAD4 765 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 SLC35G2Q8TBE7 412 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 PAGR1Q9BTK6 254 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 PI4K2AQ9BTU6 479 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 ADAMTS5Q9UNA0 930 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 C19orf81C9J6K1 198 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 HNRNPDLO14979 420 aaKnown RBP11.51□□□□□ -0.57
CUX1-221ENST00000622516 STBD1O95210 358 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 KIF4AO95239 1232 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 MXI1P50539 228 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 NCKAP1LP55160 1127 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 DOCK1Q14185 1865 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 CCDC70Q6NSX1 233 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 PEX26Q7Z412 305 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 TAF4BQ92750 862 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 GPRASP2Q96D09 838 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 BICD1Q96G01 975 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 XPNPEP1Q9NQW7 623 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 GINM1Q9NU53 330 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 BTBD7Q9P203 1132 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 ATMINO43313 823 aaPredicted RBP11.51□□□□□ -0.57
CUX1-221ENST00000622516 SGPL1O95470 568 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 GUCY2DQ02846 1103 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 NAA35Q5VZE5 725 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 GADL1Q6ZQY3 521 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 METTL13Q8N6R0 699 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.51□□□□□ -0.576e-12■■■■■ 36.6
CUX1-221ENST00000622516 DHX38Q92620 1227 aaKnown RBP11.51□□□□□ -0.57
CUX1-221ENST00000622516 EPB41L5Q9HCM4 733 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 ANKEF1Q9NU02 776 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 HOXC10Q9NYD6 342 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 STIM2Q9P246 746 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 ADAM21Q9UKJ8 722 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 LTBP3Q9NS15 1303 aa11.51□□□□□ -0.57
CUX1-221ENST00000622516 PARP14Q460N5 1801 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 PHIPQ8WWQ0 1821 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 CLGNO14967 610 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 CYP26A1O43174 497 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 BUB1BO60566 1050 aaPredicted RBP11.5□□□□□ -0.57
CUX1-221ENST00000622516 PSAPP07602 524 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 ATP4AP20648 1035 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 CARSP49589 748 aaKnown RBP11.5□□□□□ -0.57
CUX1-221ENST00000622516 EPC2Q52LR7 807 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 OTUD6AQ7L8S5 288 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 SLC47A2Q86VL8 602 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 NCAPG2Q86XI2 1143 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 TAS1R2Q8TE23 839 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 ATP6V0A1Q93050 837 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 CLMNQ96JQ2 1002 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 FAM213AQ9BRX8 229 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 CYP26B1Q9NR63 512 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 HPCAL4Q9UM19 191 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 NENFQ9UMX5 172 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 SNCAIPQ9Y6H5 919 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 IRF6O14896 467 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 ITGA4P13612 1032 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 GGCXP38435 758 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 CETN1Q12798 172 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 SEZ6Q53EL9 994 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 C10orf76Q5T2E6 689 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 GPC2Q8N158 579 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 OTUD5Q96G74 571 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 C12orf42Q96LP6 360 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 ELP3Q9H9T3 547 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 TSKSQ9UJT2 592 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 NFU1Q9UMS0 254 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 COG5Q9UP83 839 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 WDR81Q562E7 1941 aa11.5□□□□□ -0.57
CUX1-221ENST00000622516 TMEM110-MUSTN1A8MSY1 372 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 EIF3JO75822 258 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 HEXIM1O94992 359 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 TUBBP07437 444 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 FDX1P10109 184 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 COPB2P35606 906 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 PRPF4BQ13523 1007 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 SUPT20HL1Q3ZLR7 823 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 ABHD15Q6UXT9 468 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 ZNF572Q7Z3I7 529 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 RPUSD2Q8IZ73 545 aaKnown RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 CTNNBL1Q8WYA6 563 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 KREMEN1Q96MU8 473 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 AGPAT1Q99943 283 aa11.49□□□□□ -0.57
CUX1-221ENST00000622516 POLR3FQ9H1D9 316 aaPredicted RBP11.49□□□□□ -0.57
CUX1-221ENST00000622516 MYH9P35579 1960 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms