RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PPP2R5AQ15172 486 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 CLLU1OSQ5K130 101 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 TWF2Q6IBS0 349 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 DEFB123Q8N688 67 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 SMG8Q8ND04 991 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 TMEM161BQ8NDZ6 487 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 SPIRE2Q8WWL2 714 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 YME1L1Q96TA2 773 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 ELAC1Q9H777 363 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 SLC28A3Q9HAS3 691 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 KMT5AQ9NQR1 393 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 FAM105AQ9NUU6 356 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 KBTBD4Q9NVX7 518 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 TMEM161AQ9NX61 479 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 MTMR10Q9NXD2 777 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 CHMP5Q9NZZ3 219 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 SERTAD1Q9UHV2 236 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 KCNH3Q9ULD8 1083 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 ODF2LQ9ULJ1 636 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 PCDHB7Q9Y5E2 793 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 MICAL3Q7RTP6 2002 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 LOXHD1Q8IVV2 1947 aa15.68■□□□□ 0.1
SHKBP1-217ENST00000598558 A0A1B0GUA9 196 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 ACKR2O00590 384 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 ZNF623O75123 536 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 ERLIN2O94905 339 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 AFF1P51825 1210 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 NDUFA8P51970 172 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 PAN2Q504Q3 1202 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 PPP2R2DQ66LE6 453 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 AGMOQ6ZNB7 445 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 FAM43BQ6ZT52 329 aaPredicted RBP15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 MRPL10Q7Z7H8 261 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 ZBTB8OSQ8IWT0 167 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 GRAMD1CQ8IYS0 662 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 MYCT1Q8N699 235 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 RNF169Q8NCN4 708 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 GUCD1Q96NT3 240 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 CASD1Q96PB1 797 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 C17orf80Q9BSJ5 609 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 FGFBP2Q9BYJ0 223 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 C2orf40Q9H1Z8 148 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 PDZD7Q9H5P4 517 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 C17orf75Q9HAS0 396 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 PRMT7Q9NVM4 692 aaPredicted RBP15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 FAM13BQ9NYF5 915 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 LRFN2Q9ULH4 789 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 HES2Q9Y543 173 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 PCDHB2Q9Y5E7 798 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 CHD9Q3L8U1 2897 aa15.67■□□□□ 0.1
SHKBP1-217ENST00000598558 K7ERI5 159 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 ACTN4O43707 911 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 FAM13AO94988 1023 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 KRT18P05783 430 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 STAG3L1P0CL83 205 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 MAPTP10636 758 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 NMT1P30419 496 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 AXLP30530 894 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 NCKAP1LP55160 1127 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 DMP1Q13316 513 aaPredicted RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 PCBP1Q15365 356 aaKnown RBP eCLIP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 MAPK6Q16659 721 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 ZNF697Q5TEC3 545 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 LRRC55Q6ZSA7 311 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 IQUBQ8NA54 791 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 TARS2Q9BW92 718 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 IKZF4Q9H2S9 585 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 ZHX3Q9H4I2 956 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 TMEM134Q9H6X4 195 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 DACT1Q9NYF0 836 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 MRPL42Q9Y6G3 142 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 CNTNAP2Q9UHC6 1331 aa15.66■□□□□ 0.1
SHKBP1-217ENST00000598558 TTC3P53804 2025 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 A0A1W2PQ27 194 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 A0A1W2PQ64 194 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 A0A1W2PQD8 194 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 FRMD3A2A2Y4 597 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 TBKBP1A7MCY6 615 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 ABLIM1O14639 778 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 NPTXRO95502 500 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 EOMESO95936 686 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 EFNA5P52803 228 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 PRPF4BQ13523 1007 aaKnown RBP15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 ZC2HC1CQ53FD0 456 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 NOTUMQ6P988 496 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 HAUS6Q7Z4H7 955 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 SFR1Q86XK3 245 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 FSIP1Q8NA03 581 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 HELQQ8TDG4 1101 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 HPS3Q969F9 1004 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 ZBTB45Q96K62 511 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 PRIMPOLQ96LW4 560 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 IPO9Q96P70 1041 aaKnown RBP15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 ACO2Q99798 780 aaKnown RBP15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 TRIM9Q9C026 710 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 CXCL16Q9H2A7 254 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 PRDM12Q9H4Q4 367 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 PARVGQ9HBI0 331 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 PTPRHQ9HD43 1115 aa15.65■□□□□ 0.1
SHKBP1-217ENST00000598558 MTUS1Q9ULD2 1270 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms